Leclercia sp. Colony189: GNG29_01110
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Entry
GNG29_01110 CDS
T06321
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ler
Leclercia sp. Colony189
Brite
KEGG Orthology (KO) [BR:
ler00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ler03016
]
GNG29_01110
Enzymes [BR:
ler01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GNG29_01110
Transfer RNA biogenesis [BR:
ler03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GNG29_01110
Prokaryotic type
tRNA splicing ligases
GNG29_01110
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QGW15212
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Position
236982..238208
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AA seq
408 aa
AA seq
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MKQTDFDVLSAQHSAPVKMWTHGVPVEPEAREQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLLAGDLPDNLHGLRSAIEQAVPHGRTNTRS
RRDKGAWAKTPDEVDNHWARLAPRFKRLTDKYPQLLKTNNHQHLGTLGTGNHFIEICLDE
QQRVWVMLHSGSRGVGNAIGNVFITLAQKDMQQHIANLPDRNLAYFQEGSRHYNDYIEAV
EWAQDFARHNREVMMSRVLAALSRIVPKPFLTQQEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAQKGEMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTAAKKRFTVADQVRA
TAHVECRKDSEVIDEIPMAYKDIDAVMAAQASLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagactgattttgatgttttaagcgcgcagcacagcgcaccggtaaaaatgtgg
acgcacggggtgcccgttgagccagaggcgcgcgaacagttgctcaataccgcaaagatg
ccgtttatttttaagcatctggcggtgatgccggatgtgcatctcggaaaaggctccacc
attggcagcgtaatccccactaaaggggcgatcattcccgcggcggtgggggtggatatt
ggttgcggaatgattgccgtgcggacatctctgctggcaggcgatctgccggataacctt
cacgggctgcgcagcgccattgaacaggcggtgccgcacgggcggaccaacacccgctcc
cgtcgcgacaagggagcatgggcaaagacgccggatgaggtggataaccactgggcccgg
ctggcgccgcgcttcaaacggctgacggataaatatccgcaactgctgaaaaccaataac
catcagcatctggggacgctgggcaccgggaaccactttatcgagatctgcctggatgag
cagcaacgcgtctgggtcatgctccacagcggttcgcgtggcgtgggcaatgccatcggc
aatgtgtttatcacgctggcgcagaaggatatgcagcagcatattgccaacctgcctgac
agaaacctggcctatttccaggaggggagccggcactataacgactacatcgaagccgtg
gaatgggcacaggattttgcgcgccataaccgcgaggtgatgatgtcccgcgtgctggcc
gcgctctcgcgcattgtgccaaagcctttcctcacgcagcaggaggcggtgaattgccat
cacaactatgtccagaaggagcgtcattttggtgaagaggtcctggtgacgcgcaaaggg
gcagtgtcggcgcagaagggcgagatggggatcatccccgggtcgatgggggcgaaaagc
tttatcgtgcgcggcctgggcaatgaagagagcttctgctcctgcagccatggggcaggg
cgggtgatgagccgcacggcggccaaaaaacgcttcaccgttgccgatcaggttcgtgcc
acggcccacgtcgagtgcagaaaagacagcgaggtcatcgatgagatcccgatggcctat
aaagatatcgatgccgtcatggcggcgcaggcgtcgctggtcgaaatcgtccataccttg
cgccaggtggtctgtgtaaaaggataa
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