Leclercia sp. Colony189: GNG29_08805
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Entry
GNG29_08805 CDS
T06321
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ler
Leclercia sp. Colony189
Pathway
ler03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ler00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GNG29_08805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ler03400
]
GNG29_08805
Enzymes [BR:
ler01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GNG29_08805
DNA repair and recombination proteins [BR:
ler03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GNG29_08805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QGW16637
LinkDB
All DBs
Position
complement(1870862..1874308)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQNRFSLPVKAGDQRQLGELTGAACATLVAEIAERHQGPVVLVAPDMQNALRLHDEIR
QFTDQLVTSLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDGLRVQLDSAGYRHVDQVMEHGEYATRGALLDLYPMGSEQPY
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPSGIEYWQPLFFSEPLPALFSYFPANTLVLNTGDLETSASRFESETR
ARFENRGVDPMRPLLEPELLWLRTDELFSELKRWPRMQLKTDSLPEKAANTNLAYQPLPD
LAVQAQNKSPLDNLRKFLESFTGPVIFSVESEGRREALGELLGRIKVAPKRILRLDDASG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYAGMTTLEAGGIKGEYLMLLYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRATFLAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMMSRFRSAKEQAQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLMTPHPKAMTPDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKDEASLEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGMIEFAEKNHVDPMWLIGLLQKQPQHFRLDGPTRLKFTQDLAERKTRMDWVRNFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaaaatcgtttttccctgcccgtcaaagcgggcgaccaacgccagttaggt
gaactgaccggggcagcctgcgccacgctggtggcggaaattgcagagcgtcatcagggc
ccggtggtactggtcgcgccggacatgcaaaacgccctgcgtctgcatgatgagatccgc
cagttcaccgatcagctggtcaccagccttgccgactgggagacgctgccttacgacagc
ttctcgccgcaccaggagatcatctcctcgcgcctctccacgctgtatcaactgccctcc
atgcagcgcggcgtgctgattgtgccggtcaataccctgatgcagcgcgtctgtccgcac
agctatctgcacggccacgcgctggtgatgaaaaaaggccagcgcctctcgagggatggc
ctgcgcgtgcagctcgacagcgcgggctatcgccatgtcgatcaggtcatggagcacggg
gagtacgccacccgcggcgcgctgctcgacctctaccctatgggcagtgaacaaccttat
cgtctggactttttcgacgacgaaatcgacagcctgcgcctgtttgatgccgatacccag
cgcacgctggaggaagtggaggccatcaacctgctgccggcccacgaattcccgaccgac
aaaaccgctattgagctcttccgcagccagtggcgcgataagtttgacgtcaagcgcgac
gccgaacatatctaccagcaggtgagcaaaggcaccctgccgtcagggatcgaatactgg
cagccgctgttcttcagcgagccgctgcctgccctgttcagctatttcccggccaatacg
ctggtgctcaacaccggcgatctggagaccagcgccagccgtttcgagagtgaaactcgc
gcccgctttgaaaaccggggggttgatccgatgcgcccgctgctggagcccgagctgctg
tggctgcgcaccgatgagctgttcagcgagctgaaacgctggccgcgcatgcagctcaaa
accgacagcctgccggagaaagctgccaataccaacctggcctaccagccgctgccggac
ctcgcggtgcaggcgcagaacaaatcgccgctggataacctgcgtaagttcctcgaatcc
tttaccggtccggtgatcttctctgtggaaagcgaagggcgccgtgaggcgctgggcgag
ctgcttggccgcattaaggtcgcaccgaagcggatcctgcgcctggacgacgccagcggc
aacggacgctacctgatgatcggcgccgccgaacatgggtttattgatacgctcaataat
ctggcgctgatctgcgaaagcgatctgctgggtgagcgcgtggcgcgccgccgtcaggac
agccgccgtaccatcaacccggacacgctgatccgcaacctggcggagctgcatcccggc
cagccgattgtccatctggagcatggcgtaggccgttacgccgggatgaccaccctggaa
gcgggcggcatcaagggtgaatacctgatgctcctgtacgccaacgacgccaaactctat
gtgccggtgtcgtccctgcacctgatcagtcgctacgcgggcggtgcggaagagaatgcc
ccgctgcacaagctcggcggcgatgcgtgggcgcgggcgcggcaaaaagcggcggagaaa
gtgcgcgacgtagccgcggagctgctggatatctacgcccagcgcgcggcgaaggcgggc
tacgccttcaagcatgataaagagcagtatcagctcttctgcgacagcttcccgtttgaa
accaccccggatcaggcccaggcaattaacgccgtgctgagcgacatgtgtcagccgctg
gcgatggatcgtctggtctgcggcgatgtgggcttcggtaaaaccgaagtggcgatgcgc
gccaccttcctggcggtggagaataacaagcaggtggcggtgctggtgcccaccaccctg
ctggcacagcagcactacgataacttccgcgaccgctttgccaactggccggtgcgcatc
gagatgatgtcgcgttttcgcagcgccaaagagcaggcgcagatcctggagcaggcaagc
gagggcaagatcgacattctgatcggtacccataaactgctgcagagcgacgtgaagtgg
aaagatctggggctcttgattgtcgacgaagagcaccgcttcggcgtgcgccacaaggag
cgcatcaaagcgatgcgcgccgatgtcgatatcctgaccctcaccgccacgccgatcccg
cgcacgttaaatatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgcct
gcccgccgtctggcggtgaaaacctttgtccgtgagtacgataacctggtggtgcgcgag
gcgatcctgcgtgaagtgctgcgcggcggccaggtttattatctctacaacgatgtcgag
aatatccagaaagcggcggaccgtctggcggagctggtgccggaagcgcggattgccatc
ggccacgggcagatgcgcgagcgcgagctggaacgggtgatgaacgatttccatcaccag
cgctttaacgtgctggtttgcaccaccatcatcgaaaccggtatcgatattcctaccgcc
aataccatcattattgagcgagcggatcacttcggcctggcccagctccaccagctgcgt
ggccgtgtcggacgttcgcaccatcaggcctatgcctggctgatgaccccacacccgaaa
gcgatgacccccgatgcgcagaagcgtctcgaagccatcgcctcgctggaagatctgggc
gccggttttgcgctggccactcacgacctggagatccgcggcgcgggcgaactgcttggg
gaagatcagagcggctcgatggaaaccatcggtttctcgctctacatggagctgctggaa
aacgccgtcgatgccctgaaggcgggacgcgagccgtcgctggaagatctcaccagccag
caaacggaagtggaactgcggatgccgtccctgctgccggatgattttatcccggacgtt
aacacccgcctgtcgttctacaaacgcatcgccagcgccaaagacgaagccagtctggaa
gagataaaagtggagctgattgaccgctttggcctgctgccggatgcagcgcgtaacctg
ctggatatcgcccgtttacgccagcaggcgcagaagctcgggatccgcaagctggagggg
aatgaaaaaggcggcatgattgagtttgccgagaagaaccacgtcgatccgatgtggctg
atcggcctgctgcaaaaacagccccagcacttccgtctcgatggaccgacgcgcctgaaa
ttcacccaggatctggcggagcgcaaaacccgcatggactgggtacgtaactttatgcgt
cagcttgaagagaatgccgtagcctga
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