Leclercia sp. Colony189: GNG29_12425
Help
Entry
GNG29_12425 CDS
T06321
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
ler
Leclercia sp. Colony189
Pathway
ler02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ler00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GNG29_12425 (pdeR)
Enzymes [BR:
ler01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
GNG29_12425 (pdeR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
QGW17310
LinkDB
All DBs
Position
2626964..2628955
Genome browser
AA seq
663 aa
AA seq
DB search
MIDDLEQNLLFRYMGTHSPWWRLTADSNALHLAASESADTTQVVALNDEQANSIRQMTVI
TSSITMTLSLYGTEVPVHLVGRKINKKEWTGTASAWNDTPSVARDLAQGLSFAEQVVSEA
NSVIVILDRHGNIQRFNRLSEEYTGMKEHEVIGQNVFKLFMSRSEAAASRRNISGFFRDG
SSYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRVLANTD
TITGLPNRNAIHDLISEAIETRGDGQVGVVYLDLDNFKKVNDAYGHMFGDQLLQAVALAI
LSCLEDGQVLARLGGDEFIVLATGTSQGALEAMASRILTRLRQPFRIGLIEVYTGCSLGI
SLAPQHGTDRESVIRNADTAMYTAKENGRGKFCVFSPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRTLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVMLDVV
RQVAKWRDKGINLRVAVNVSARQLADQTIFSDLKQALKDLNFEYCPIDVELTESCLIENE
ELALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAIKLDQAFVRDIHKQSVSQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWFKRYQSR
NAR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgattgacgatctggagcaaaatttgctgtttcgttacatgggcacccacagtccctgg
tggcgactgacggcggacagtaacgcgctccatcttgcggccagcgaaagcgccgatacc
acgcaggttgtggcgctgaatgacgagcaggccaacagcattcgccagatgacggttatt
acctccagtattaccatgacgctctccctctacggaaccgaggtgccagtgcacctggtg
ggacgtaagatcaataaaaaagagtggaccggtaccgcctccgcctggaacgacacccct
tccgtcgcccgcgatctggcgcaggggttatcctttgccgagcaggtggtttcagaggcc
aactcggtcatcgttattctcgaccggcacggcaatattcaacgcttcaaccgcctgagc
gaagaatataccgggatgaaagagcacgaggttatcggtcagaacgtctttaaactgttt
atgagccgcagcgaggcagcggcttcccggcgtaatatcagcggtttttttcgggacggc
agctcctatgaagtggaacgctggattaaaacccgcaaagggcagcgtttgtttttattc
cgtaataaattcgtgcacagcggcagcggaaaaaatgaaatattccttatctgttccggt
acggatatcactgaagaacgccgtgcccaggaacgtcttcgtgtacttgccaataccgac
accattaccggcctgccaaaccgcaacgctatccacgatctgatcagcgaagcgattgaa
acccgtggcgatggccaggtgggcgtggtctatcttgacctcgataatttcaaaaaagtg
aatgatgcctacgggcatatgtttggcgatcagctgctgcaggcggtggcgctggctatc
ctcagttgcctggaggacgggcaggttcttgcgcgtctgggtggcgacgagtttatcgtg
ctggcaaccggtacgtcacagggtgcgctcgaggccatggcttcgcggatcctcacccgc
ctgcgtcagcctttccggattggtttaattgaagtctacaccggctgttcgctggggatc
tccctcgcgccgcagcacggcaccgatcgggaaagcgtgatacgcaacgccgatacggcc
atgtataccgcgaaagagaacggacgcggcaagttctgcgttttctccccggaaatgaat
cagcgcgtatttgaatatctgtggctggacaccaatctgcgcaaggcgctggagaatgat
caactggtgatccactaccagcccaaaattacctggcgtggcgaggtgagaaccctcgaa
gcgctggtgcgttggcagtctccggagcgcggactgatcccgccgctggagtttatctcc
tacgccgaagagtccggactgatcgttccattggggcgttgggtgatgctggatgtggtt
cgtcaggttgccaaatggcgcgataaaggcatcaatttacgcgtggcggtcaacgtttcg
gcccgccagctggcagatcagacgattttcagcgatctgaaacaggcgctgaaggatctc
aattttgaatattgccccattgacgttgaattgaccgaaagctgcctgattgaaaacgaa
gagctggcgctgtcggtgatccagcagttcagccagctgggggcgcagatccaccttgat
gatttcggaaccggttattcgtcgctgtcgcaactggcgcgttttcccatcgatgccatt
aagctcgaccaggcatttgtccgggatatccataagcagtcggtgtcgcaatcgctggtg
cgcgcgatcgttgcagtcgctcaggcgctgaatttgcaggtgattgccgaaggggtcgag
agtgcgaaagaagacgcctttctgacgaagaacggcgtcaatgaacgacagggatttctg
tttgctaaacccatgcccgctgtcgctttcgagcgatggtttaaacgctatcagtcacgc
aatgcgcgctag
DBGET
integrated database retrieval system
