Leclercia sp. Colony189: GNG29_12495
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Entry
GNG29_12495 CDS
T06321
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ler
Leclercia sp. Colony189
Brite
KEGG Orthology (KO) [BR:
ler00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ler03032
]
GNG29_12495 (topA)
03400 DNA repair and recombination proteins [BR:
ler03400
]
GNG29_12495 (topA)
Enzymes [BR:
ler01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GNG29_12495 (topA)
DNA replication proteins [BR:
ler03032
]
Prokaryotic type
DNA Topoisomerases
GNG29_12495 (topA)
DNA repair and recombination proteins [BR:
ler03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GNG29_12495 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
QGW17323
LinkDB
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Position
complement(2640962..2643556)
Genome browser
AA seq
864 aa
AA seq
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MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAKKSADSTSTKGAKKPKK
DERSALVNRMGVNPWDNWQAQYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAW
HLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVSP
LLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASVTTPGGDTLPLEVSHQ
NDKPFRPENREQTMAAVALLEKARYQVLDREDKPTSSKPGAPFITSTLQQAASTRLGYGV
KKTMMMAQRLYEAGHITYMRTDSTNLSQDAVNMVRDYIGDNFGKKYLPESANQYNSKENS
QEAHEAIRPSDVSVLAESLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGDFR
LKARGRILRFDGWTKVMPALRKGDEDKTLPAVNAGDELSLVELTPAQHFTKPPARFSEAS
LVKELEKRGIGRPSTYASIISTIQDRGYVRTENRRFYAEKMGEIVTDRLEDNFRELMNYD
FTAQMENSLDQVANHEAEWKKVLDSFFSDFTKQLDKAEKDPEEGGMQPNQMVLTSIDCPT
CGRKMGIRTATTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKRR
CNKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLK
MGRFGKYMACTNDDCKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFL
AANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDAEGNKTVVRFSRKTKQQYVA
AEKEGKATGWSAFYVDGKWVEGKK
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgttgagtccccggcaaaagccaaaacgatcaataagtat
ttgggtagtgactacgtggttaagtccagcgtcggtcatatccgcgatctgccgaccagt
ggctcagccaagaagagcgccgactctacctccaccaaaggggccaaaaagcctaaaaag
gatgaacgtagcgcgctcgtaaatcgcatgggagttaacccatgggataactggcaggca
cagtacgaagtactgccgggtaaagagaaagtcgtctccgagctgaaacagctggcggaa
aaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaggccattgcatgg
cacctgcgggaagtgatcgggggcgatgacacacgctacagccgcgtagtgtttaacgaa
attactaaaaacgcgatccgccaggcctttgaaaagccgggtgagctgaatatcgaccgc
gtcaacgctcagcaggcgcgccgctttatggaccgcgtcgtgggttacatggtttctcca
ctgctgtggaaaaagattgcgcgtggactctccgcaggccgcgtacagtctgttgccgtg
cgtctggtggttgaacgggaacgcgaaattaaagcgttcgtgccagaagagttctgggaa
gttgacgccagcgtgaccacgccgggcggcgacaccctgccgctggaagtgtcgcaccag
aacgataagccgttccgtcctgaaaatcgcgaacagaccatggccgcggtagcgctgctg
gaaaaagcgcgctatcaggtgctggatcgtgaagacaaaccgaccagcagcaagcctggc
gcaccgtttatcacctccacattgcagcaggcggccagcacccgtctgggctatggcgtg
aaaaaaaccatgatgatggcgcagcgtctgtatgaagcgggtcacatcacctatatgcgt
actgactctaccaacctgagccaggacgccgtcaacatggtgcgtgattacattggcgac
aatttcggtaagaaatacctgccggaaagcgccaatcagtacaacagcaaagagaactcc
caggaagcgcacgaagcgattcgtccttctgacgtctctgtgctggcggaatccctcaag
gatatggaagccgatgcgcaaaaactgtatcagctgatctggcgccagtttgttgcctgt
cagatgaccccggcgcagtatgactccaccacgctgaccgtcggtgcgggcgatttccgc
ctcaaggcgcgtggccgtatcctgcgtttcgatggctggaccaaagtgatgcctgcgctg
cgtaagggcgatgaagacaaaaccctgccagcggtcaacgccggggatgaactttccctg
gttgagctgacgcctgctcagcacttcaccaagccgccggcacgcttcagcgaagcctcg
ctggtgaaagagctggaaaaacgtggtatcggtcgtccgtcgacctatgcgtcgatcatc
tcgaccattcaggatcgcggctatgtgcgcacggaaaaccgccgtttctatgcggagaaa
atgggtgaaatcgtcaccgatcgcctggaagataacttccgcgagctgatgaactacgat
tttaccgcgcagatggaaaatagcctggaccaggtggctaaccatgaagccgagtggaag
aaggtgctggatagcttcttcagcgacttcaccaagcagctggataaagcggaaaaagat
ccggaagaggggggcatgcagccgaaccagatggtgctgaccagcatcgactgtccgacc
tgcggccgtaagatgggtattcgtaccgccacgaccggtgtcttccttggctgctcaggc
tatgcgttgtcgccgaaagagcgctgcaaaaccaccatcaacctggtgccggaaaacgaa
gtgctgaacgtgctggaaggcgacgatgcggaaaccaacgcattacgcgccaaacgccgc
tgcaataagtgcggcacagcgatggacagctacctcatcgacccgaaacgtaagctgcat
gtctgcggtaacaacccgacctgcgacggttacgagattgaagagggtgagttccgcatc
aagggttatgacggtccgattgtggaatgcgagaagtgtggttctgaaatgcacctgaaa
atggggcgttttggtaagtacatggcctgcaccaatgacgactgcaaaaacacgcgtaag
atcctgcgtaacggtgaagtggcaccgccgaaggaagatccggttccgttgccggagctg
ccgtgtgaaaaatccgatgcgtactttgtactgcgtgacggtgctgcgggcgtcttcctg
gcggcgaataccttcccgaaatcgcgtgaaacgcgtgcgccgctggttgaggagctatac
cgcttccgcgatcgcctgccagaaaaactgcgttatctggctgatgcaccgcagcaggat
gcagaaggtaataagaccgtggtgcgttttagccgtaaaaccaagcagcaatatgtcgct
gctgagaaagagggtaaagccaccggctggtcagcattttatgttgacggcaaatgggtt
gaaggcaagaaatag
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