Leucoraja erinaceus (little skate): 129693542
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Entry
129693542 CDS
T09122
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03008
Ribosome biogenesis in eukaryotes
leri03013
Nucleocytoplasmic transport
leri03015
mRNA surveillance pathway
leri05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129693542 (nxf1b)
03015 mRNA surveillance pathway
129693542 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
129693542 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129693542 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129693542 (nxf1b)
03009 Ribosome biogenesis [BR:
leri03009
]
129693542 (nxf1b)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129693542 (nxf1b)
mRNA cycle factors
Stress granule specific factors
129693542 (nxf1b)
Ribosome biogenesis [BR:
leri03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
129693542 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_4
LRR_8
LRR_9
YopE_N
Motif
Other DBs
NCBI-GeneID:
129693542
NCBI-ProteinID:
XP_055486318
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
MAEDGRHYSAPQRSGSVNYQFQGKGTDQGRWNWRKEKGDRYGEHDDRVSGNFPIRKKKGR
GPFRWKMYSDANHKPRNRGGGGGNPRLRFEDEDGDVAMNDHDAPRPRFSPYGSRPSRRPG
NWHDSEGGPSNIHVTVKPNSERGSSNNANTRRNWFKITIPYGKKYDKTWLLSNLQSMSSV
PFNPVQFHYDGNKALFYVEDSTTANALKQVSRRIIDKDLYRVVIIINQSAPPSSVSNELK
AEEIVHIKQCMSKRYDGSQQALDLNTVRSDPDLVSQNIEVVLNRRNSMSTVVKIIEENIP
ELLSLNLGNNKLYRLEDLTDLISKAPGLKILNLSRNELKSERDLDKIKGFKLEELWLEGN
PLCGNFRDQATYVSAVREKFPKLLRLDGHDLPPPISFDVETPTTLPSCKGSYFGTEEIKV
IVTRFIQQYYSVYDSTDRQGLLDAYHDTACCSLSIPFTQQNPARSSLGEYFKESRNVKRL
KDPTLRARLLKHTRLNVVAFLNELPKTQHDTASFVVDVSTQTNTLLCFTVHGVFKEVDSK
SRESVRAFSRVFVAVPAGNAGLCIVNDQLFIRNATTEEIRKAFVTPAPTPSSSPVPTLTA
PQQEMLQLFSQQSSMNIEWSQKCLQDNDWDFNQAAQIFTQLKAEGKIPEIAFVRQL
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggacgggcggcactacagcgccccccagagatcaggatccgtgaattatcaa
ttccaggggaaaggaacagatcaaggaagatggaattggagaaaggagaaaggagacaga
tatggagaacacgatgaccgcgttagtggaaatttcccgatccgtaagaagaaaggacgc
ggtccattccggtggaagatgtacagtgacgcaaatcacaagccgagaaaccggggcggc
ggaggtggcaacccacgcttgcggttcgaggacgaagacggtgacgtggccatgaatgac
cacgatgcgccaagaccacggttttcgccctatggatccagaccgtcacgccgcccggga
aactggcacgatagtgaaggaggaccctcgaatattcatgttacagtgaagccaaattca
gagaggggctcgagtaacaacgccaacacaaggaggaattggtttaaaatcactattccc
tatggaaagaaatatgacaagacctggcttttatcaaacttgcagtccatgagttcagtt
ccctttaaccctgtccagttccattatgacggtaataaggcattgttctatgttgaagat
tcaacaactgcaaatgctctgaagcaggtatccagaaggatcattgacaaagatttatac
cgggttgtgatcatcataaaccaatcagcgccgccatcttccgtgtcgaatgagctcaag
gctgaagagatagtgcacataaagcaatgcatgagtaaacgttacgacggatcgcagcag
gcgctcgacttaaacaccgtacgcagtgacccagaccttgtctcccagaatattgaagtg
gtgttaaacagaaggaattccatgagcaccgttgtcaagataatagaagagaatattcca
gagctgctctctctcaacctgggcaacaacaagctgtacagattagaggacctgacagac
ttgatttctaaagcacctggtttgaaaattttgaatctttccagaaatgagctcaaatcc
gaaagagatctggacaaaataaaaggcttcaagctggaggaactttggttggaagggaat
cctctttgtggaaactttcgggatcaggctacctacgtcagtgcggtcagggaaaaattt
ccaaagctgctcagactggacggccatgaccttccgcctccaatttcctttgacgttgaa
acaccgaccacacttccttcttgcaagggcagttactttggtacagaggaaatcaaggtc
attgtgacacgtttcattcagcagtactactctgtatacgattcgacggacaggcaggga
ctcctggatgcttatcatgacacggcctgctgctcgctgagtatcccctttacacaacag
aaccccgccaggagcagcctgggagaatatttcaaagaaagccgaaatgtgaagaggctg
aaagatccaacactacgggcgaggttgttgaaacacaccaggttaaacgtcgtggccttt
ctcaacgagctcccaaagacgcagcacgacacggcttccttcgttgtggacgtcagcacg
cagacgaacacgctgctctgttttactgtgcacggtgttttcaaagaagtcgacagtaaa
tcgagggagtccgtgagggccttctcgagggtgttcgttgccgtgcctgctgggaacgca
gggctgtgcattgtgaacgaccagctcttcatcaggaacgctaccacggaggagatccgc
aaggcctttgtgacccccgcgcccacgccgtccagcagtcccgtgcccaccctcaccgct
ccccaacaggaaatgctgcagcttttctcacagcagtccagcatgaacatagagtggtcg
cagaaatgcctgcaggacaacgactgggacttcaatcaggctgcgcaaatcttcacacag
ctcaaggctgaaggcaaaattcctgaaatagcgtttgtgaggcagctatga
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