Leucoraja erinaceus (little skate): 129693680
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Entry
129693680 CDS
T09122
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3
KO
K08736
DNA mismatch repair protein MSH3
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129693680 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leri03400
]
129693680 (msh3)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129693680 (msh3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_22
Motif
Other DBs
NCBI-GeneID:
129693680
NCBI-ProteinID:
XP_055486439
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Position
3:complement(772591..1009588)
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AA seq
1108 aa
AA seq
DB search
MPKTRGRGGKAAGNQVVISRFFRPAARTERGKEQRREEDSVATTSPCQQILDTKKKQETK
VEQGEPWAKRRKLASREENGDVLRKDSQEPTARRHPRISSGTLDRLKEFSVDRHLETSCV
KDSGGDAQWTNIRCTDNSDLYSDDVGTEMCDGMLRKDLNGKLEQSHSQETASRDRSPFSA
SNKGTSVKNSVEDRGVNRRTKSAYTPLELQFLEIKKQHQDAVLCVECGYKYRFFGDDAEI
AARELNIYCHPDHNFMTASIPVYRLFVHVRRLVAKGYKVGVVKQMETAALKAVGENKGNI
FTRKLTDLYTKSTLIGEDILSLSFPFNPLLNLDLDDEGEGASEVPNSYLMCIFEQAANKK
DRKKQGIQIAFVAVQPNTGDVVYDCFHDCKSRSELESRILCLQPVEILLPPELSENTEKL
LASISASSLRDDRIRVERMDNFHFEYTNAFQLVSEFCAPGTSDVSESRQLSTLLKLEMPV
VSCLGAVVKYLSEFKLEKILKNASNLSKFSEDSSWMSINGTTLKNLEILQNQTTGTKKAS
LFWVLDHTQSSFGRRLLRKWVARPLIKASEINARLDAVAEILSSDSIVLAKTQSLLSKLP
DLERGICSIYHKKCSTWEFYQLLRTLSNLEVGFQALLPAAASELSSSLLRNVLSELPQLL
NPVHHYLKILDENAAKSSDKTQLFRDLTDFPVIQQRKQEIQEVFSRLQQHRKDIRRILNK
PSFDYITVSGQEFLVEVKNSLLHIIPSEWTKISSTKAVVRFHTPFIVEQYRCLCQLREQL
VLDCSAEWLQLLDQFGEHYHGIRKAIGHLATIDCTFSLAAVAKQGGYSRPTVLQEKRQIV
IKNGRHPVIDILMGEQEQYVPNGTGLQGDGQRAMVITGPNMGGKSSYIRQVAMITIMAQI
GSYVPAEEAVIGIVDNIYTRMGASDNIYNGQSTFMEELTEAAEIIKKATSRSLIILDELG
RGTSTHDGIAIAYATLEHFVKDVKSLTLFVTHYPPVCELEKLYPQNIGNYHMAFLLNEED
EQNGSAEELQPESITFLYQLTEGAAARSYGLNVAKLASIPEEVLKKATQKSKELEGLMNT
KREKLKSFSEVWKIKEGKDLVDWLMVNK
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagacgagaggccgcggggggaaggctgctggaaaccaggttgtgatcagcagg
tttttccgccctgcagccaggacagagcggggaaaggagcagaggcgggaagaagacagt
gtggcaacaacttccccatgtcagcagatactggacaccaagaagaaacaggaaacaaaa
gtcgaacaaggtgaaccttgggcaaaacgtagaaagttggcaagtcgagaagagaatgga
gatgtacttagaaaagatagccaggagccaacagctcgccggcatccgaggatatcttca
ggcaccctggacagactgaaggaattttctgttgaccggcacctagaaacgtcatgtgtt
aaggattcgggtggggatgcccaatggacgaacatcagatgcacagacaattcggatttg
tattctgatgatgttggcacagaaatgtgtgatgggatgcttagaaaggatttgaatgga
aaactggagcagtcgcattcccaggaaacagcgagccgtgataggagtccgttttcagct
tcaaacaaggggaccagtgtgaagaacagtgtggaagacaggggagttaatcgcaggaca
aagagtgcgtacactccactcgagctgcagttcctggagataaaaaaacagcaccaagat
gcagtgctgtgtgtggagtgtgggtataaatacaggttcttcggtgatgatgctgagatt
gcagctcgggagctgaatatttactgccatccagaccacaactttatgacggccagcata
ccggtgtaccggctgtttgtccatgtacgccgcctggtggccaagggctacaaggtagga
gtggtgaagcagatggagactgcagctctgaaagccgttggagagaacaaaggcaacatc
tttactcgcaagctgacagacctgtacaccaagtcaaccctcatcggagaagatatcctt
tcactttcattcccttttaatcccttgttgaatctggatctggatgacgagggagaaggg
gctagtgaagttcccaacagctacctgatgtgcatctttgagcaagcagcaaacaaaaag
gaccgtaagaaacagggaattcagattgcgtttgtggcggtgcagcccaacactggcgac
gtggtctatgattgtttccacgactgtaaatcccggtcggagctggagagccggatcctg
tgcctgcagccggttgagatcctgctcccgccagagttgtccgagaacacggagaagctt
ttggcgagtatctcggcttcaagcttgcgtgatgacagaattcgtgttgagcggatggac
aatttccattttgagtacacaaatgctttccaactagtctctgagttctgtgcgcctgga
acctctgatgtttcagaatcacgacaattatccaccttattaaaattggagatgcctgtt
gtttcctgtttgggagcagtcgtcaaatatctatccgaattcaaattggagaagatacta
aagaacgcaagtaacctgagcaagttctctgaagactcctcttggatgtcaatcaatgga
acaactttaaagaacttggaaattttacaaaaccagaccactggcacaaagaaagctagt
ctattttgggtcctagatcatacccagagttcctttggaagacgactactgaggaaatgg
gtggcacgaccattaatcaaagcaagtgaaattaatgcgcgcttggatgctgttgctgaa
atcctatcatcggattccatcgtcctggcgaagacccagagcttgctgtctaaactccct
gatctggagagaggaatctgtagcatttatcacaaaaagtgctccacgtgggagttctac
cagctgctccgtactttgtccaacctggaggtgggtttccaggctttgcttccggctgct
gcgtctgagttaagctcgtctcttctgcgtaacgttctgtcggagctgccacagctgctg
aaccctgtgcatcactacttgaagattctggatgaaaatgcagccaagtccagtgataag
acgcagctcttcagagacctcactgacttccctgtgattcagcaacgaaaacaggagatc
caggaggtgttttcccggctgcaacagcatcgcaaggatattcgtcgaattctgaacaaa
ccatctttcgattacattacagtttcgggacaagagtttctcgtggaagtgaaaaattcc
ctgctgcacatcattccatctgaatggacaaaaatttccagtacaaaagctgtcgttcgc
ttccacaccccattcattgtggagcagtaccggtgcttgtgccagcttcgtgagcaactt
gtcctcgactgcagcgcagagtggctacaactgctggatcagtttggtgaacactaccat
ggaataagaaaggcaattggtcacctggcaaccattgactgtaccttttcattggcagca
gttgctaagcaaggaggatattccagaccaactgtactgcaagaaaagaggcaaatagtg
ataaagaatggcaggcacccagtgattgacattcttatgggagaacaggagcaatatgtt
ccaaatggcactggactgcaaggcgatggacagagggctatggtcattactggacccaac
atgggaggaaagagctcttacattagacaagtagccatgatcactattatggcacaaatc
gggtcgtatgtcccggcagaagaagctgtgattggtattgtggacaacatttacacaaga
atgggagcttctgacaatatctacaacggtcaaagtacatttatggaagagctgacagag
gctgcagagatcattaaaaaagcgacgtctcgctcattgatcatcttggatgagctggga
aggggtacaagtactcatgacggcattgctattgcctacgccaccctggagcattttgta
aaagatgtgaagtccctgacactctttgttacccactacccgcccgtgtgtgagctggag
aaactttacccacagaacatcggcaattaccacatggctttcctgttaaacgaggaagat
gaacaaaatggatcagcggaggaacttcagcctgaatcgatcactttcctctatcagctg
actgagggggctgctgctcggagttatggtctcaatgtcgccaaattagcaagtattccc
gaggaagtgctaaagaaagccactcagaaatccaaggagctggaaggcttgatgaatact
aagagggagaagttgaaatccttctctgaagtctggaaaataaaggaagggaaagatcta
gtggactggttaatggtgaataaataa
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