KEGG   Leucoraja erinaceus (little skate): 129693726
Entry
129693726         CDS       T09122                                 
Symbol
kdm5c
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 5C
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
leri  Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:leri00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:leri01009]
    129693726 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:leri03036]
    129693726 (kdm5c)
Enzymes [BR:leri01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     129693726 (kdm5c)
Protein phosphatases and associated proteins [BR:leri01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     129693726 (kdm5c)
Chromosome and associated proteins [BR:leri03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    129693726 (kdm5c)
SSDB
Motif
Pfam: PLU-1 KDM5_C-hel JmjC ARID JmjN zf-C5HC2 PHD
Other DBs
NCBI-GeneID: 129693726
NCBI-ProteinID: XP_055486475
LinkDB
Position
Unknown
AA seq 1519 aa
MSDFEEFVAPPECPVFEPSWEEFGDPLGYIAKIRPVAERSGICKIRPPLDWQPPFAVEVD
NFKFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGSTLKIPNVERRILDLYSLNKIVVD
EGGYEGICRERRWSRVAQRLGYPPGKGIGSLLRSHYERVIYPFYTFQSGASLACQPGPQF
DSEEKDREYKPHSIPLRQSVQPPKMNSYGRRAKRLQAETEPTEADIAKNPELKKLQIYGA
GPKMVGLGLVVKDRASRKKDKDCLDCPPTLVVKEEMVGEHKVEVCVLEPCAQVKEDRAAT
LLSPCGVVGCLDKDCLDCPPTLVVKEEMVGEHKVEVCVLEPCAQVKEERAATAPSGKMTM
RLRKGAASMLQLDSYVCVICSRGAEDSKMVLCEGCEDTYHTVCLVPPLPDNPRGDWRCPK
CVVEECKKPAEAFGFEQATREYTLQSFGEMADSFKCDYFNMPAHMVPTELVEKEFWRLVS
SIEEDVTVEYGADIHSKEFGSGFPTKGGKRQLAPEEEQYTTCGWNLNVMPVLEQSVLCHI
NADISGMKVPWLYVGMCFAAFCWHIEDHWSYSINYLHWSAHGGGIIANLQGGWASGQKRG
RCSLMRINARLSTLVARVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPA
GRRCVEHYRWLRRYCVFSHEELICKMAACAERLDMGLAAAVHKEMFIMVQEERQLRKALL
DKGITEAEREAFELLPDDERQCDKCNXTCFLSALACQPANCPDRLVCLLPHPLLCDCPPA
RHYLRYRYTLDELPAMLHKLKVRAESFDTWAGKVRAALEPDGKPKRTLEDLHALVAEAQE
RKYPDSGLMQQLRSSVQETERCITEARRLAAGKGGRAQADVLETEHKLTVEELRTFIKHL
HSLPCDIDLVQDVQDVLAPXLXGVSSQRTHAALRDLPAGSVELRELLEEGGRLVVEVPEV
TRLRGEALQAEWLREVREALSGRAGVTLELLRPLVEVGSRLQAQPAVDNAMLELNELLAI
AERWEEKAHICLKARQKHPAAMLEAIIKEAENIPVELPNVQALKDAMSKARAWIADVEEI
QNGDHYPCMDDMEGLVAVGRDLPVRMDELPHLESQVAAAHTWREKATRTFLKKNSCYTLL
EVLCPCADVGLDNVRRAKWKRAKDNQLDKGDNEGLGLSAQDIRDPGSIIVAFKEAEQKEK
EGIRQLRARVAGGCVCSRPAGGPSLQCELCGGRFHTACVPCPCLPSPRRCAAWWDWDVRF
LCPLCQRSRRPRLQLILSLLVALQKLPVRLPEGEALQCLTERAIVWQDRARRAMAAREVG
AALEGLDEARRRLQADRGKDRSRLGPQQRKVDEQKGEAVDTTEGKDTKPAGLTAGVDELR
LESPALELSETGAAQLEELMIDGDLLEVTLDENHNLWKVLQACGTPPHEKMQTLLQIEKL
ESKLAKLRGRDSAEKRRKRKLERSDSLPLAEEEDEEGLEPGEVKRPKEEGARGKGEAELP
AHDVGVSRSSVTHNGVEHL
NT seq 4560 nt   +upstreamnt  +downstreamnt
atgtcggacttcgaggagtttgtggcgccgcccgagtgcccggtcttcgagccgagctgg
gaggagttcggcgacccgctgggctacatcgccaagatccggccggtggccgagaggagc
ggcatctgcaagatccggccccccctggactggcagccccctttcgcagtcgaggtcgac
aacttcaagttcacaccccgaattcagcggttgaatgaattggaggcacagacgcgagtc
aagttaaacttcctggaccagatcgccaagttctgggaactccaggggtcgacgttgaag
atccccaatgtggagcggagaatcctcgacttgtacagcctcaacaagattgtggttgac
gagggcggctatgagggcatctgccgtgaacggcgctggtcacgtgtggcccagcgtctg
ggctacccaccgggcaagggtatcggctcgctgctgcgttcccactatgagcgcgtcatc
taccccttctacaccttccagtctggagccagcctagcgtgccagccaggcccccagttt
gacagcgaggagaaggaccgggagtacaagccccacagcatcccgctgcgacagtccgtg
cagccccccaagatgaacagctatgggcggcgagccaagcggctccaggccgagacggag
ccgacagaggcagacatcgccaagaaccccgagctgaagaagcttcagatctatggggct
ggacccaaaatggtggggctgggactggtggtgaaggaccgagccagcaggaagaaagac
aaggactgtctggactgcccgcccactctagtggtgaaggaggagatggtgggcgagcac
aaggtggaggtctgcgtcctggagccgtgcgctcaggtcaaagaggatcgagcagcgact
ctcttgtctccgtgtggtgtggtggggtgtctagacaaggactgtctggactgcccgccc
actctagtggtgaaggaggagatggtgggcgagcacaaggtggaggtctgcgtcctggag
ccgtgcgctcaggtcaaagaggagcgagcagcgactgcccccagcggcaagatgaccatg
aggctgaggaagggggcagcctccatgttgcagctggactcgtacgtgtgcgtcatctgc
tcccgcggcgccgaggactccaagatggttctgtgcgaggggtgcgaggacacctaccac
accgtctgcctcgtcccccctctgcccgacaacccccgcggggactggcgctgccccaag
tgtgtcgtggaagagtgtaagaagccagcagaggcgtttggctttgaacaggccaccagg
gagtacacgctgcagagcttcggcgagatggccgacagcttcaagtgtgattacttcaac
atgccagctcatatggtccccacagagctggtggagaaggagttctggcggctggtgagc
agcatcgaggaggacgtgacggtggagtacggagctgacatccactccaaggagtttggc
agcggattccccaccaaggggggcaagaggcagctcgcacccgaggaagagcagtacacc
acgtgcggctggaacctgaacgtgatgccggtgctggagcagtcagtgctgtgccacatc
aacgccgacatctcgggcatgaaggtgccctggctctatgtgggcatgtgcttcgccgcc
ttctgttggcacatcgaggaccactggagctactccatcaactacctgcactggtcagca
cacggggggggcatcatcgcaaacctacaaggaggttgggccagtgggcagaagcgcggc
agatgcagtttaatgcggataaatgcgaggttatccactttggtggcaagagtggtccgg
accaaccagtgcgcgggggagtttgtcatcaccttcccgcgggcctatcacagcggcttc
aaccagggctacaactttgccgaggccgtcaacttctgcaccgctgactggctgcccgcg
ggccgccgctgcgtggagcactaccgctggctgcggcgctactgcgtgttctcgcacgag
gagctgatctgcaagatggcggcctgcgcggagcggctggacatggggctggcggccgct
gtccacaaggagatgttcatcatggtgcaggaggagaggcagctgcgtaaagctctcctc
gacaagggcatcacggaggcggagcgagaggcgtttgagttgctgccggatgatgagagg
cagtgtgacaagtgcaacnccacctgcttcctgtccgccctggcctgtcaacctgccaac
tgccccgaccggctggtctgtcttcttccacatccactcctgtgtgactgtcctcccgcc
cgacactacctcaggtaccgctacacgctggacgagctgccggccatgttgcacaagctg
aaggtccgagcggagagcttcgatacctgggcgggcaaagtccgcgccgctctggagccc
gatggcaagcccaagagaacgctggaggatctgcatgcgttggtggcagaggcgcaggag
aggaagtacccggacagcgggctgatgcagcagctgcgcagtagcgtgcaggagacggag
cggtgcatcacagaggcgcgccgactggctgcgggcaaggggggcagggctcaggcagac
gtgttggagacggagcacaagttgacggtggaggagctacgaaccttcatcaaacacctc
cacagcctcccctgtgacatcgacctggtccaggacgtacaggatgtgctggctccctag
ttgtgaggagtttccagccagcgtacacatgcagcattacgtgatctgcctgcgggcagc
gtggagctgcgggagctgctggaggagggtggccggctggtggtggaggtgccggaggtg
accaggctgcgaggcgaggcgctgcaggcggagtggctgcgggaggtgcgggaggctctg
tcgggccgggccggggtgaccctggagctgctgcggcccctggtggaggtggggtcccgg
ctacaggcccagcctgctgtcgacaacgccatgctggagctcaacgagctgctggccatc
gctgaacgctgggaggagaaggcccacatctgtctcaaggccaggcagaagcatccagca
gccatgctggaggccatcataaaggaagcagagaacattcccgtggagttgcccaacgtc
caggccctgaaagatgccatgtccaaggctcgggcctggatcgcagacgtggaggagata
cagaacggggaccactacccctgcatggatgacatggaggggctggtggcggtggggcgt
gacctgcccgtacgtatggacgagctgcctcacctggagagccaggtagcggccgcacac
acctggagggagaaagctacacgcaccttcctgaagaagaactcctgctacaccctgctg
gaggtgctgtgcccgtgcgctgacgtgggtctggacaatgtccggagggccaagtggaag
agagccaaggacaaccagctggacaagggcgacaacgagggcctggggctgtctgcccag
gacatccgggaccctggatccatcatcgtggccttcaaggaggcagagcagaaggagaag
gaaggtatccgccagctacgagcccgtgttgcagggggctgcgtgtgtagccgtccagca
gggggccccagcctgcagtgcgagctgtgcggtggccgtttccacaccgcgtgcgtgccc
tgcccgtgcctcccctcgccacgccgctgtgccgcctggtgggactgggacgtgcggttc
ctctgcccgctctgccaacgttcccgccgcccgcggctccagctcatcctctcgctgctg
gtggccctgcagaagctgcccgtgcgtctgcccgagggagaggccctacagtgcctgacc
gagagggccatcgtgtggcaggaccgtgcccggcgcgccatggcagcccgagaggtgggc
gcagcgctggaggggctggacgaggcacgccggaggctgcaggccgataggggcaaggac
aggagccgactcgggccgcagcagaggaaggtggacgaacagaaaggtgaagccgtggac
acgacagaaggcaaagacacaaagccagcaggcctcactgcgggcgtggacgagctgaga
ctggagtcgccggcgctggagctgtcggagacgggtgcagcacagctggaggagctgatg
atcgacggggacttgctggaggtcaccctggacgagaaccacaacctgtggaaggttcta
caggcctgcggcacccccccccacgaaaagatgcagacgctgctgcagattgagaagctg
gagagcaagctggccaagctccggggcagagactctgcagagaagcggcgcaagaggaaa
ctggagcgctcggactcgctgcccctggcagaggaggaggatgaggaggggctggagccg
ggggaggtgaagaggcccaaggaggagggagcgagagggaagggagaggccgagctgccg
gcccatgatgtcggagtctcacggagttcagtcacacacaacggagtggagcatttatga

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