Leucoraja erinaceus (little skate): 129694298
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Entry
129694298 CDS
T09122
Name
(RefSeq) dmX-like protein 1
KO
K24155
rabconnectin-3a
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
129694298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
leri04131
]
129694298
Membrane trafficking [BR:
leri04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
129694298
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
129694298
RAVE complex
129694298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_ACSF4
VPS11_N
HAND
ThsA_Macro
Motif
Other DBs
NCBI-GeneID:
129694298
NCBI-ProteinID:
XP_055486984
LinkDB
All DBs
Position
3:complement(88297648..88514583)
Genome browser
AA seq
2828 aa
AA seq
DB search
MNLHQVLTGAVNPGDSCFSVGNVGEQPFTAYASGCDIVILASDFERLQIIPGAKHGNIQV
GCVDCSMQEGKIAASYGNLVCIFEPIPLLNRESKHSTLNYQWQKSGQFVLESKAHNLAWD
PQGIRLLTGSNSLQLWANENQEMDINEEEATDGTDPNEVNNWQCIWESETATPIHLLKVS
PDGEFFATAGKDDCLVKVWYNSSSWQSAVMTPITPMDKEEDDIDFSFVYLAHPRAVTGFS
WRKTSKYLPRGSTCHVLLTCCKDNVCRLWAETLLPSDSLLSGEGYTQWSESVTASSNLKR
NISSREKLNIGPFRIGRRRSSGLVAHTGYLPNQLDAHELHRNVPLHANSLCHFHIAASIN
PATDIPLLPSITSLSLSENEETNGPFVVHWLNNKELHFTLSMEVFLQQLRRSLEQPSPES
GNEEFGQMENQSDEDKDAGEKTSSDVMVDHKIDMLLAEWNKNADMLFSIHPMDGSLLVWH
VDWLDEYQPGMFRQVQISFASRIPVAFPTGDANSLSKSIVMYACTKNVDMAIQQGKQKPH
GLTHSSSGMLISAGHNKSSGNLKLSIFTPNVLMISKHADGSLNQWAVSFAEESVFSTVLG
VSHKSRYCGHRFHLNDLACHSVLPLLLTTSYHNALRTPDGMCLYNDGWSFDPLRCSSSWS
SNQRENTTAAAFQDSNSIYSELILWRVDPVGPLSYSGGVSELARINSLHVSAFSNVAWLP
TLIPSYCLGAYCNSPSACFVASDGRNLRLYQAVIDAKKLLSELSNPEISRLVGEVFSIVS
QQSTARPGCIIELDAITELYGKETQLLHVFKEDFILVNQSMKRQKNERSGTNKTSPRQET
EKPQNGFSEKFFLVVIEHKQNSQSLLHMWHLHLKSDPISIDHSTKNSLVPPEEQNGTSSE
KIYSPFFKKYQACKANLQSASRLALISTRVYSRELPLPEGVEIIRATPSAGHLSSSSVHP
ACLAPYLLATSCTDGKVRFWRCRVSALPMSSAAGDGVENDLVYSWEEWPLLIEEGLQNSS
AVTVPGRPVDVCCSYTNRLAVAYKKSIPVHEHSSKHFTMHVGIFECESTGASQWIHEQTI
HLDDFSQTGPILDPRISIDSNLVLHNKYRLHFSNDYQMTFDAKPLVHLDWVSKEDGSHIL
TIGIGSKLLMYGQVSGIIQNQTKKEAPAVFSLSLWDSAKEVSQSRWILLRSLDLVSSVDG
SLSLPVSLSWVRDGILVVGMDCEMHVYSQWQPPDKSDSMITEAESASIPSMVSLGKCAST
NGSNQYLYKKSLAKSMTGLAQKFGGRKVPFHWNIEMEDSGLFEASHDLSPTLPQYHPLQL
LELMDLGKIRRAKAILSHLVKCIAGEVITVSDTETSHERRLRSLTISASGSTARDPLTSN
KSENPDYTEIDSIPPLPLCALLAADEDISHTTFEKKINCANFTKKNERHSTGNNYDELFA
MSSVGADDLNSFDVDEGNKQKVIDLSQYSLTYFGPEHARVLSSHLLHSSLPGLTSMEQMF
LMALADTVATISTDIGESRERTQGGETLDECGLRFLLAMRLHTFLLTSLPPVYRAQLLRQ
GLSTCHFAWAFHSEAEEELLNMIPAMQRGDPHWSELRSMGVGWWVRSTVILRRCIEKVAK
AAFQRNNDPLDGAIFYLAMKKKAVLWGLFRSLHDKKMTEFFGKNFNDDRWRKAALKNAFA
LLGKQRFEQAAAFFLLAGSLKDAIEVCLERLHDIQLALVIARLYESEFEVSSTYKSILIE
RILGFDKKSKDFNLSLRNSDPVLRSMAYWILEDYTNSLNTLLEQGTRDVDDSDGVTVPKL
SVICQSLTNLRIFKVVFACPSNIVSSEEFLSPSEDVIAAQLKFGACLKILTSELRTLSTG
YEVDGGKLRYQLNKWLEREIMALQKTCNYNVAEDRKDNSEGLWDELPNEEQMENGVIDQQ
RTLHHQEYLQRRRLWLFQNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESQQIHVL
HTIAASLSACLYQCLCDGHSNGSLYANQFTGMVYQSFLFTRQRLNRAASLDCSVTPNTSP
DQWPGIKELIQLLNSAGDEDKPKLTVLLCEVLTAIYLSLFVHGLGTHSSNELFRIVTHPL
NSNMWAAIFGGGAHVPATDQIQATATTVEALEELSDPELQIDPYHFSMSEAEVVKVTGEV
APTDENHVSHFMSITPRPMIRDSETASPNHASPDVNQRIPVYKENFIPPELSIWDYFIAK
PFLAPSQSKDEYDSDESQDSDDEDDAFSSDVQLQEHSNPNSFSWSLMRYAMVQLVLHKLK
NFYPMAGLHLSELPVCSPSCHAILKTLQHWEQVLLRRLELFGGPPPDFISMHANEGTISS
GPALLIHKVLLEPTNTPFKSKHHTALPVKRLWQYLVKQEEVQETFIRNIFTKKRCPNESV
DNSNEKVRNSMTEEPSINKMETDAGYPGGRARIVHKESDIITAFAINKANRNCVAIATSH
DIQELDVSAILATQIYAWIEDEFEQDSKGYEKSDEFLVVHAREDFGDLQCSTPYTPSVPG
IPINMPWLGSTQTGRGASVMIKRNMNNARRMASHPTLPYYLTGAQDGSVRMFEWGHSHQL
ACFRPSGNSRITRIRFNHQGNKFGIVDGDGYLSFWQTNPIALGATPKPYLTWQCHNKTAN
DFVFVSSSTLIATAGQSSDNRNICLWDTLVPQSNSLIHAFTCHESGATVLAYASKQQLLL
SGGRKGFICILDLRQRQLRQTFQAHDSPIKAIAVDPTEEYFITGSAEGNMKIWNLSTLNP
IHTFSNEHARQSLFRNIGTGVMQIETGPANHIFSCGADGTMKMRILPDRFSTGSGKLDIW
QNDVKFIL
NT seq
8487 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttcatcaggtcctcaccggcgccgtcaatcccggcgacagctgtttctcagtg
ggcaacgtcggcgaacaaccattcacggcctatgcctctggatgtgacattgtcatttta
gccagtgattttgaaagacttcaaattatccctggggccaaacatggaaacattcaagtt
ggatgtgtcgattgctccatgcaggaaggaaagattgcagcatcatatggaaatttagtt
tgcatttttgagcctattccccttttaaatcgggaaagtaagcattctacgctgaattat
caatggcaaaaaagtggacagtttgtattggagtcaaaggcgcataatttagcatgggat
cctcaaggaatccgtcttttgacgggctccaattctttacagctctgggccaacgaaaat
caagagatggatataaatgaagaggaagctacagatgggacagatccaaatgaagttaac
aattggcaatgcatctgggaatctgaaactgcaacacccatccatctattaaaggtgtct
ccagatggtgaattttttgccactgcaggaaaggatgattgtcttgtgaaagtgtggtac
aattccagcagctggcagtcagcagtgatgacaccaatcaccccaatggacaaagaggaa
gacgacattgatttttcctttgtgtatttagcccatcctcgggctgtgacaggattctct
tggcggaagaccagcaagtacttgccaaggggctccacatgtcatgtcttgctgacctgc
tgtaaggacaatgtttgtcggttatgggcagagacattactaccaagtgatagtttgctt
tctggtgagggctacacccagtggtctgaatctgttactgcaagcagcaacctcaaaagg
aatatttccagtcgggaaaagttgaatattggaccatttcgaataggcaggaggaggtca
tctggccttgttgcacatactgggtatttaccaaatcaactagatgcacatgaactccat
aggaatgtgcccctacatgcaaattcactttgtcattttcatatagcagccagtattaat
ccagcaacagacattccgctcctgccttccatcacttcattaagtttaagtgaaaatgaa
gaaactaatggaccctttgtagtccattggctaaataataaggagctgcatttcaccttg
tcaatggaagtatttttgcagcagttgcgaagaagtttggagcagccatctccagagtct
ggaaatgaggaatttggacagatggagaaccaatctgatgaagacaaagatgctggggaa
aaaacttcttcagatgtgatggtagatcataagatcgacatgctgttagctgaatggaac
aaaaatgcagacatgctcttcagtattcatcctatggatggctctttattggtgtggcat
gttgactggttggatgaatatcaacctgggatgtttcgacaagtgcagatttcatttgcc
tctcggattcctgttgcatttccgactggtgatgcaaactctctcagcaagagcatagtt
atgtatgcctgcacaaaaaatgtagatatggctattcaacaagggaaacagaagccacat
ggtctgactcattcctcatctggcatgttaatttctgctggccataataaatcatctggg
aatctaaaactgagtatcttcacacctaatgtgctcatgatctcaaaacatgcagacgga
tccttgaatcagtgggcagtcagctttgcagaagaatctgtattttcaacagtccttggt
gtatctcataagtctcgttactgtggccatcgctttcatctgaatgacttggcttgccat
tcagttttaccattacttttaactacttcataccacaatgcgctacgaacaccggatggc
atgtgcctttacaatgatggatggagctttgacccattacgatgtagcagttcgtggtca
agtaatcagagggaaaataccacagcagctgccttccaggattctaattcgatatatagt
gaactaattttgtggcgagttgatcctgtcgggccattgtcgtattctggaggggtatcg
gagttggcaaggatcaattctctgcatgtttcagccttttcaaatgtggcttggctgcca
actctaatcccaagctactgtctaggtgcatactgcaactctcctagtgcatgttttgtg
gcaagtgatggacggaacttacgattatatcaagctgttattgatgctaaaaagcttttg
agtgagctttctaatccagaaatctctaggcttgttggagaggttttcagtattgtgagt
caacagtccacagcaagaccaggctgcattattgaactggatgctatcactgaactttac
gggaaagaaacacaattgcttcatgtctttaaagaggattttatattagttaatcaatcc
atgaaaaggcagaaaaatgaaaggagcggaacaaacaaaacaagtccacggcaggaaaca
gaaaagccgcaaaatggattttccgaaaaattctttttggtagtgattgagcataaacag
aacagccaatcgctattgcatatgtggcatttacacctgaaatccgatccaatctccatt
gatcactccactaagaattctttggtgcctccagaggaacagaatggcacttcctctgaa
aagatatattcacctttcttcaaaaaatatcaggcttgtaaagcaaatttacaaagcgcc
agtcgacttgctctcatctcaacaagagtttatagccgagagttacctctgccagaaggt
gttgaaattattcgagccactccctctgcagggcacctgagttcctcatcagttcaccca
gcatgtcttgctccgtatcttctggcaacttcctgcacagatggaaaagttagattctgg
cgctgtagagtgtcagctcttccgatgtcttctgcagctggagatggtgtggagaatgat
ctagtttattcttgggaagaatggcctctgctgattgaagaaggacttcagaacagcagt
gcagttaccgtaccaggaaggcctgtggatgtttgctgttcatacacaaaccggctggct
gtggcttacaaaaagtctattccagttcatgaacattccagtaagcacttcaccatgcat
gtgggtatatttgaatgtgaatcaactggagcctctcaatggattcatgaacaaacaata
cacttggatgactttagtcaaacaggtccaattttggacccaagaatcagcattgatagt
aacctagtccttcataataaatatcgtttacatttcagcaatgattatcaaatgacattt
gatgcaaaacctttggttcacttagactgggtctccaaggaagacggatcacacatatta
actattggaattggatctaaacttctaatgtatgggcaggtatctggaataatacaaaat
caaacaaagaaagaagcaccagcagttttctctttgtctttatgggatagtgccaaagaa
gtatctcaatccagatggattcttctcagaagtttggatttggtttcctcagtggatgga
tcattatcgctgccagtttctctgtcttgggtgcgtgatggtatcttggttgttggtatg
gattgtgaaatgcatgtttattcacagtggcagcctcctgacaaaagtgattcaatgata
actgaagctgaaagtgccagcattccttcaatggttagtctaggaaagtgtgctagtaca
aatggatccaaccaatatctctacaaaaaaagcctggcaaagtcaatgacagggctggct
caaaaatttggtggcagaaaggttccatttcattggaatattgagatggaagactctggc
ctttttgaagcttctcatgatttatctcccacactaccacagtaccacccgctgcagctt
ttggagttaatggacttgggtaaaatcaggcgggccaaagccatattgtctcatttagtt
aaatgtattgcaggcgaagtaatcactgttagtgatactgaaaccagccatgagcgacga
ctccgatctttgacaattagtgcaagtggcagcacagccagagatcctctaacttcaaac
aaaagtgaaaatcctgattacacagaaatagactccatccctcctcttcctctctgtgca
cttttagctgctgatgaagacatttctcatacgacctttgaaaagaaaatcaattgtgca
aattttacaaagaaaaatgaaaggcattcaacaggaaacaactatgatgaactatttgca
atgtcaagtgtgggtgcagatgatctaaatagttttgatgttgatgaaggcaataagcag
aaggttattgacctttcccagtacagtcttacctactttggtcctgaacatgcacgagta
ctatctagccatttgcttcattccagtctgcctggtcttaccagtatggaacagatgttt
ttgatggcactggcagatactgtggccaccatcagcactgacattggagaaagcagagag
agaacccaaggtggagaaacacttgatgaatgtggcttaagatttcttttagcaatgcgg
ctacatacattcctattaacatcactaccacctgtttatcgagcacaacttcttcgacaa
ggtttatctacatgtcattttgcctgggcctttcattcagaagcagaggaggagctgctg
aacatgatccctgcaatgcaaagaggagatccccactggtcagagctcagatcaatggga
gtggggtggtgggtgcgcagcacagtcattcttcgcaggtgtatagagaaggttgccaaa
gctgcatttcaaagaaacaatgatcctttggatggagctatattttatcttgcaatgaag
aaaaaggctgtactctggggcctattcaggtcccttcatgataaaaaaatgacagagttt
tttggaaaaaatttcaacgatgatagatggagaaaggctgcattgaagaatgcgtttgcg
ttattagggaaacagagatttgaacaagctgcagctttcttccttttggctggttcccta
aaggatgcaattgaggtttgtcttgaaagacttcacgatattcagttagcacttgttata
gcaagattgtatgaatcagagtttgaagtgtcctccacttacaagtctatacttatagaa
aggatcctaggctttgataagaagagcaaagattttaacctttctttaagaaattctgat
cctgtattgagaagtatggcttattggattctggaagattacacaaactctctgaataca
ctattggagcaagggacgagagacgtcgatgattctgatggagtaacagttcctaagctc
tccgtcatttgccaaagtttgaccaacctacggatattcaaggtggtgtttgcatgtcca
agcaacattgtctcatctgaagaatttttaagtccttcagaagatgttatagcagcacaa
ctaaaatttggagcatgtttgaaaatactcacatcggagctgcgtactctctctaccggt
tacgaggtagatggtggaaaactccgctatcagttgaacaaatggctcgagagggaaatt
atggccctacagaaaacgtgcaattacaatgttgcggaagacagaaaagataattctgaa
ggtctctgggatgaattacccaatgaagagcagatggaaaatggagtcattgaccaacaa
aggacattacaccaccaagagtatttgcaaagaaggcggctgtggcttttccaaaaccag
ccgcttctaaggatgttccttagttattgtagtcttcatggatcacacggtggaggtttg
gcatcagtcagaatggagttgattcttcttttgcaagaatctcagcagatccatgtattg
cacactattgctgcttcgctgtcggcatgcctctaccagtgtctgtgtgatggccacagt
aacggttctttgtatgcaaaccaattcactggaatggtctatcagagttttctgtttaca
cggcaacgattaaacagagcagcgagtttagattgctcagtgactcccaatacatctcct
gaccaatggccaggaataaaggaactgattcagctcttaaattcagctggagatgaagac
aagcccaaattaacagttctactttgtgaggtgttgacagcaatttatcttagccttttt
gttcatggtttgggaactcattccagtaatgagctgttccgtatcgtgactcatcccctt
aacagtaacatgtgggctgcaatttttggtggaggtgcacatgtacctgcaacggaccaa
atccaggccacagctacgacagtagaagcgttagaagagttatctgatccagagctgcag
attgatccctaccatttcagtatgtctgaggctgaagtagttaaggttactggtgaggtt
gctcccactgatgagaaccatgtcagccattttatgagcataacgccaagaccaatgatc
agagattctgaaacagcctctcccaaccatgcttctcctgatgtaaaccagaggattcct
gtttataaagagaattttatcccaccagagcttagtatctgggattactttattgcaaag
cccttccttgccccgtcacagagcaaagatgaatatgattcagacgaaagccaagatagt
gacgatgaagatgatgcattttcttcagatgtacagcttcaagagcattcaaatcctaat
tctttcagctggtcactgatgcgatatgctatggtgcagttggtgctgcataaattaaag
aacttttacccaatggcaggcctgcatctttcagaactcccggtttgttctccttcttgt
catgcaattttaaagacacttcagcactgggaacaggtactacttcgacgacttgagtta
tttggtggtccacctccagacttcatctcaatgcatgccaatgaaggcacaatatcttca
ggtcctgcccttctcatccataaagtgttactagaaccgacaaatacgccattcaagtca
aaacatcatactgcacttccagttaaaagactttggcagtatcttgtgaaacaggaagag
gtgcaagagactttcattagaaatattttcaccaaaaaaagatgtccaaatgagtcagta
gacaactccaatgaaaaagtcagaaattctatgacggaggaacctagcatcaacaagatg
gaaacagatgctggttatcctggtggtagagcgaggattgttcacaaagaatcggacatc
attacagcattcgcaataaataaggctaataggaattgcgttgccatcgccaccagccat
gatatccaagagctggatgtttctgcaatcttggcgacccagatttatgcttggattgaa
gatgaatttgaacaggattcaaaagggtatgaaaaatcagatgaattcctggtggttcat
gcgagagaggattttggtgatttgcagtgcagcactccatatacccccagtgttcctggc
atccctataaacatgccatggttaggcagcacacagactggaagaggagcatctgtgatg
ataaagaggaatatgaataatgccaggagaatggcttcacatccaacactaccttactat
ctgactggtgctcaagatggcagtgttcggatgtttgaatggggccactcgcatcaacta
gcatgctttcgaccttctggtaattctagaataacaagaatccgatttaatcatcagggt
aacaagtttggcattgtagatggagatggatatctgagcttctggcaaacaaatccaatt
gctttaggagccactccaaaaccttatttgacttggcagtgccataacaaaacagcaaat
gattttgtttttgttagttcctctactttaatagctacggcagggcagtctagtgataac
aggaatatctgcctctgggatacacttgtgccacaaagtaatagtctcattcacgcattc
acatgtcatgaaagtggagctactgtgttggcatatgcatcaaagcagcagcttttatta
tctggtggaagaaaaggtttcatctgtatacttgatctacgccagcgacaattacgtcag
acgtttcaggctcacgattcgcctattaaagcgattgctgtggatccaacagaggaatac
ttcattacagggtctgctgagggtaacatgaagatttggaatttgtccactctcaacccg
attcatacattctcaaatgagcatgctcgacagtcgctcttcagaaacataggaacaggg
gtcatgcaaatagagactggtccggcaaatcatatattctcctgtggagctgatgggaca
atgaaaatgaggatcctgccagatcgctttagcacaggaagtggaaaattggatatctgg
caaaatgatgtaaaatttatactataa
DBGET
integrated database retrieval system
