Leucoraja erinaceus (little skate): 129694515
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Entry
129694515 CDS
T09122
Symbol
smg5
Name
(RefSeq) LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129694515 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129694515 (smg5)
03032 DNA replication proteins [BR:
leri03032
]
129694515 (smg5)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129694515 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
129694515 (smg5)
DNA replication proteins [BR:
leri03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
129694515 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1
EST1_DNA_bind
SURF2
Motif
Other DBs
NCBI-GeneID:
129694515
NCBI-ProteinID:
XP_055487207
LinkDB
All DBs
Position
Unknown
AA seq
801 aa
AA seq
DB search
MNHPDPDGETEGESDAKLLHTKRLYRAVVEAVHRLDAIVSNKMAYREVFKPENISLRNRL
RELCVKLMXLHAVDYGRKAEEPFXEEGYYEVIQPSLPNKKHIHSRSALECAYRTHLIAGI
GFYQHLLLYVQSHYQLELHSSIDWTHVTDPLIGRRKLVTASGKEMEWAQMACHRCLMYLG
DLARYQNELSGVDTEQLAERFYHQSLSVAPHVGMPFNQLGTLAGSKYYNVDATYYYLRWH
LSRDIKRLLVSFMYLQSLLQPKHSTSEVEVTSICQSVLEDFNLCLFYLPSSVGQSGCSEE
EEEYERGFGFLPDLLVFHMLLICLMSVHSLKKTGMKQYSAAIAFTLALFFSHLVNHVNIR
LQAELEEGEKQRAHPAARPPRDVPEGPALPPQAPDQEGPDGAASRLANGATGVVKGRGKK
YPRLCQLRRRRQRQRGEESDLSEGFDSDPSEDSAKDSEGSDSGSEPSEEEEQAAFDMESD
SDMNSQESRSDLGDIEEEPGPGPGPGPTEGGAPQQGGTQDTGAPTPPPTARGLPTTCHRQ
QPACPLPHRCSAPRDASFFAPYIRAQLPGHKLPLKQPAPTEPWPRQARWFERAGPAPTSN
DHRPPVWGSSTTLTVLSLAELAEFCGTPCRAPFAPLSRHPPAWRCRSWRAAGNSQGASPT
LSQYIIPNTQAICQQLPNIRHLASSSRFIIIIPRKGRSGLCNRYIRCQRETGRSVDRHKL
KRHDLDAWHLYKILDSCKQLTVSQGSGEEEVAGMVTILTDFSPDDPSTLSSNVQAALQAA
HSSGVDVRNVQDFYKQWKEMG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatcccgaccctgacggcgaaaccgagggtgaatctgacgccaaactcctgcac
acaaagcggttgtaccgggccgtggtggaagcagttcatcgattagatgcaattgtcagc
aacaagatggcgtaccgggaagtattcaaacccgaaaacatcagcctccgcaacaggctg
agggagctgtgtgtgaagctgatgntcctgcacgctgtggactacggtcgcaaggctgag
gagccctttnnggaggaaggttactacgaggtcatccagccctccctccccaacaagaag
cacatccacagccggagtgcgctagagtgtgcgtaccgcacccacctgatcgctggcatc
ggcttctaccagcacctgctgctctacgtccagtctcactaccagctggaactgcacagc
tccattgactggacacacgtcacagaccccctcataggtcggaggaaactggtgacagct
tcaggcaaggaaatggaatgggctcagatggcttgtcacaggtgcctgatgtacctggga
gaccttgcacgataccagaacgagttgtcgggggtggacacggagcagctggccgagagg
ttttaccaccagtcgctgtcggtggctcctcacgtgggcatgcccttcaaccagctcggg
accctggctggcagcaagtattacaacgtggatgccacttactactacctcagatggcac
ctatcgagagacatcaagcgtctgttggtgagtttcatgtacctgcagagcctgctgcag
cccaaacacagcacgtcggaggtggaggtgacatcaatctgccagtctgtgctggaggat
ttcaacctgtgcctcttctacctcccgtcctctgtcggtcagagcggctgcagtgaggag
gaggaggaatatgagcgaggattcggcttcctgcccgacctgctggtcttccacatgctc
ctcatctgcctcatgagtgtgcacagcctgaagaagacaggtatgaagcagtacagcgcg
gccatcgccttcaccctggccctcttcttctcccacctggtcaatcacgtcaacatccgc
ctacaggccgagctggaggaaggagaaaaacagcgtgcccaccctgcagcccgacccccc
agggatgtgccggagggcccagcccttcccccgcaggccccggatcaggagggtccggat
ggggcagcgagccggctggcaaacggtgccacgggggtcgtcaagggccggggcaagaag
tacccacgtctgtgccagctccgacggcggagacaacgacagcgtggggaggagagtgat
ctgagcgagggttttgactcggaccccagcgaggactctgccaaggacagcgaggggtct
gactccggctcagagcccagtgaggaggaggagcaggctgccttcgacatggagtcagac
tccgatatgaacagccaggagtcccggtccgacctgggtgacattgaggaggagcctggg
cctgggcctgggcctggtcccaccgagggaggggccccgcaacaaggggggacccaggac
acaggcgccccgacaccccctccaacggcccggggcctcccaacgacctgccatcgccag
caacctgcatgccctctccctcacagatgttcagccccaagagatgcttccttttttgcc
ccctacattcgggcgcaacttcctggtcataagctccccctgaaacagccggcccccacc
gaaccctggccccgacaggcccggtggtttgaacgggctggtccagcccctacgagcaac
gatcaccgaccccccgtgtgggggtccagcaccacgctcaccgtcctgtctcttgcagag
ctcgcagagttctgtggaacgccctgtcgcgcgcccttcgcaccactgtcccggcaccca
ccagcctggaggtgtcgcagttggagggcagctggcaacagccaaggagccagtcccacc
ttgtctcagtacatcatccccaacacacaggccatctgtcagcagctgcccaacatcagg
cacctggccagcagtagccgcttcatcatcatcatcccccgcaaaggacggtctggtctc
tgtaacaggtacatccgttgtcagcgcgaaactgggcgctctgtggacagacacaagctg
aagcgacacgacctggacgcgtggcacttgtacaagatcctggacagctgcaagcagctg
acggtgtcccagggcagtggggaagaggaggtggccggaatggtgaccatcctgacagac
ttctccccggatgaccccagcactctctccagtaacgtgcaggctgcgttgcaggccgca
cacagctcgggtgtggatgtgaggaatgtccaggatttctacaaacagtggaaggagatg
ggctga
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integrated database retrieval system
