KEGG   Leucoraja erinaceus (little skate): 129695386
Entry
129695386         CDS       T09122                                 
Name
(RefSeq) vimentin-like isoform X1
  KO
K07606  vimentin
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:leri00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    129695386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leri03019]
    129695386
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:leri04812]
    129695386
   04147 Exosome [BR:leri04147]
    129695386
Messenger RNA biogenesis [BR:leri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     129695386
Cytoskeleton proteins [BR:leri04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     129695386
Exosome [BR:leri04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   129695386
  Exosomal proteins of other cancer cells
   129695386
SSDB
Motif
Pfam: Filament CCDC39 Tropomyosin DUF1664 DUF7491 ABC_tran_CTD PUMA_CC CENP-F_leu_zip ACBP4_C ATG16 PI3K_P85_iSH2 WDR18_C RPM2 HAUS1 Laminin_II DUF6267 HH_AprE DUF5798 FKBP15 DUF4407
Other DBs
NCBI-GeneID: 129695386
NCBI-ProteinID: XP_055488264
LinkDB
Position
3:complement(23268130..23281734)
AA seq 401 aa
MRSSSYSTKTTSVSRCNKSGPRVQSPSPSRHRSHSSESLAGGRGRSRGPAVERNEKEEMQ
QLNGIFEGYIDKARSLERRKGQLRQEAAALRERLREPGGPEAEYQQQLKELRELVEELAH
RKGLAKIETGNVQEHINCWRLKCQEELDLQGEAERVLREFQKDVTDANLRKAELERKMEE
VAGEMGFLKLLHDEEVTDLTRQIEESKVSAELESARPDLGAALRSIRVEMEEISARNLRD
TEAWYKSKLNSLHQHASRFDGQIQTTKEEINILQRETDELESEINSLRSINQCLEDQLDD
METRHLGKAANLQQAISQLEFHLRETQSQMSRYLQEYQDLLHVKVKLDAEIATYRKLLEA
EEDRLGLIHKSEAGASSVMREKRTESITRNVEKHMTFKVTA
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgaggagctcttcctacagcacgaagaccacctccgtaagcagatgcaacaagagcggc
ccgagggtccagagcccttccccgtcccgccaccggtcccactccagcgagtccctggca
gggggaaggggccgctccagggggccggcggtggagaggaatgagaaggaagagatgcag
caactgaacggcatcttcgaaggttacatcgacaaggcgaggagcctggagcggcgcaaa
gggcagctacggcaggaggcggcggcgctgagggagcgcctcagagagcccggggggccg
gaggcagagtaccagcagcagctgaaggagctgagggagttggtggaggagctggcacac
cggaaagggctggctaagatcgagaccggcaacgtccaggaacacatcaactgctggagg
ctgaagtgtcaggaggagctggatctacagggtgaagccgagagggtcttgcgggaattc
cagaaggatgttactgatgccaacctgcggaaagcggagctggagaggaagatggaggag
gtggcgggcgagatgggattcctgaagttgctgcatgatgaagaggtgaccgacctgacc
cgtcagatcgaggagtccaaggtgtcggccgaacttgagtcggcccgtccggatctggga
gcggccttgaggtccatccgggtggagatggaagagatttccgccaggaacctgagagat
accgaggcctggtacaagagcaagctgaacagcctccatcagcacgccagcaggttcgac
gggcagatccagaccaccaaggaggagatcaacatcctgcagcgggagacagacgagctg
gagagcgagatcaactccctccgaagcatcaaccaatgcctggaggaccagctggacgac
atggagaccaggcacctggggaaagcagccaaccttcaacaggccatctcccagttggag
ttccatctacgggagacccagtcccagatgtcccggtacctgcaggagtaccaggacctg
ctgcacgttaaggtgaagctggacgctgagattgcgacgtacaggaagctattggaagcc
gaggaggacagactggggctgattcacaagtctgaagcaggcgcatcctctgtaatgcga
gagaagagaacagaatccatcactcgtaatgtggagaagcacatgacgttcaaagtgact
gcctaa

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