Leucoraja erinaceus (little skate): 129695389 Help Entry 129695389         CDS       T09122                                  Symbol htt Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism leri  Leucoraja erinaceus (little skate) Brite KEGG Orthology (KO) [BR:leri00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:leri03019]     129695389 (htt)    04131 Membrane trafficking [BR:leri04131]     129695389 (htt)    03029 Mitochondrial biogenesis [BR:leri03029]     129695389 (htt) Messenger RNA biogenesis [BR:leri03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      129695389 (htt) Membrane trafficking [BR:leri04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     129695389 (htt) Mitochondrial biogenesis [BR:leri03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     129695389 (htt) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_GCN1 HEAT_2 HEAT_EF3_N CLASP_N Vac14_Fab1_bd Motif Other DBs NCBI-GeneID:  129695389 NCBI-ProteinID:  XP_055488269 LinkDB All DBs Position 3:23442794..23644476 Genome browser AA seq 3108 aa AA seqDB search MATMEKLMKAFESLKSFQQGPSSEEPGQKQKKESATTKKERVTHCLTICENIAAQSLRNS PEFQKLLGIAMEMFLLCCDDAESDVRMVADECLNKIIKALTDSNLPRLQLELYKEIKKNG SSRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLARISKRSEESVQETLAGAVPKIMAA LGNFANDGEIKILLKTFIGNLKSSSPTMRRTAASSAVGICQHSRKTQYFYTWLLNVILGF LVPVEEDRPTPLVLGVMLTLRYLLPLLRQQVKDTSLRGSFGVTRKEAEISPSLEQLVQAY ELTLHYTQHRDHNVVTAALEVLQQLFRTPPPELLRTLTTAGSIARVSIARDDTSNRLRSS SIVELIGKMVSGEEDGLEDDAETRSEVSATTFPGSMNSEGTGEVPSSSGASTLGSTSPVA DSAGNDIITEQPRSQHTLQSAESADLNSSATSDLTGLTVEGAADETLSRSSSQISTIQSD TNADPNDRTNQATSPLSESSQTTEGPDSAVTPSDSSELVLDGTESQYSAMQIGQLQDEEE DTLNTTGDALLESFTTSTLAVNKSHLLSHMGHSRQSSDSSVDRFVSKDDCVESADLETKP CRIKGDIGHYTDENAAPLVHCVRLLSASFLLTGQKNGLIPDKEVRVSVKALAVSCVGAAI GLHPEAFFNKLYRTSLEVLESQEDQCISDILKYVNHGDPQIRGATALLCSTFIHSALTKT RFNPESWLAVVQGATGYGFTLEDCVPLLQKTLKDKSSVTCKMACAAVRQCITSLCNSSYS ELGLQLIIDLLNLKNNSYWLVRTELLETLAEMDFRLVSFLERKTVDLHRGQHHYTGMLKL QERAINNVIINLLGDEDPRVRHVAATTLVRLIPRLFFDCDQGQSDPVVAVARDQSSAYLQ LLMHETQSTSHFAVSAITRTYRGFNISESTTDVTIENNLSRVITAVSHALTSSTSRALIL GCCEVLCLLSLNFPVCNWSIGWHCGYTTSSSQASRVNLYKNRGRSFSLSQNSPTDDSRKS CTVGMVNMILSLLSSAWFPLDLSSHQDALILSGNLLAAIAPKSLKNPWANEDDTSATTKI EEPWPALADRSLVGMVEQLFSHLMKIINICAHVIDDVTPGPVLKATLPSLSTAPSLSPIR RKTKERESAEQMAAPMSPKKSTESSPAARPADAVGIAPTSKSTSLGSFYHLPPYLKLHDV LKATYANYKVTLDLQNNNEKFGSFLRAALDVLSQLLEIATLPDIGKCVEEILGYLKSCFC REPMAATVCVQQLLKTLFGTNLASQYDGSSSHPGKSQGKVQRLGSSSLRPGLYHYCFMAP YTHFTQALADASLRNMVQAEPEQDTSGWFDVLQKVSSQLKVSMTNVTRHRADKNTIHNYI RLFEPLVIKALKQYTTTTSVHLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYI EVGQFRESEAIIPNIFFFLVLLSYERYHSKPIIGIPKIIQLCDGIMASGRKAITHAIPAL QPIVHDLFVLRGTNKADAGKELDTQKEVVVSMLLRLIQYHQSCNKHLEMVLEMLILVLQQ CHKENEDKWKRLSRQIADMILPLLVKQQMHLDSHEALGVLNTLFETVAPSSLRPVDMLLK SMFAMPATLESVGTVQLWISGILAILRVLISQSTEDIVLSRVQELSLSPYLICCQNISRL RDTGNQTFPTEEHEEDMQNKHLPEETFARFLLQLVGILLEDIVNKLLKVDMSEQQHSFYC QQVGTLLMCLIHIFKSGMFRRITAAATKLIMGNGSDGSFYTLETLNNLVQTIIPTHPSLV LLWCQILLLVNYTNYNWWSEVHQTPKRHSLSRTKLLNPQISENGASKSVSKLGMCNREIV RRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAIHRNSAASGLFI QAIQSRCDNLATPTMLKKTLQCLEGIHLSQSGAVLMLYIDKLISTPFRVLARMVDTLACR RVEMLLAESLKNSVAQVPREELERIQRYLQTTCLAQRHQRLYSLLDRFRATVAADTVSPS PNVTTHPLDGDKLSDIESIVVDKDWYVLLIKFQCCNRSNTALMECTELLDKLPEDDLHSI MTTKDFNLNLLTPCLALGLQGICTDQTSVLFETARKVTLDRVTFHVQHLPSNQQVWQSLC PLPNPSHWNKIGELYGDVHFYHSVIGLCSALAQYLLSLPKLPPSLQIPPDNEADITSFMV MSLEALCWHLLQDQVPLSLDLQAALDCCCLVLQQPSIWNLLASAAYVTQACSVINCIQFI IEAMAVEPGEHHLLHEERRKSNADRMEDEESANVSERSKYITKACNVMTEMVESLQTVLS FGHASNYRIPAFLNPTLRNIGISLARLPLVNSYTRAPPLVWKLGWSPRVGGEFGTTLPEI PVEFLQEKEVFKEFIYRINVLGWTSRTQFEETWATLLGVLVTQPLVMDQEEEVPQEEDTE RTQINILAVQAITSLVLSAMSIPVAGNPATSCLEHQPRNKALKALDTRFGRKLSAIRGIV EREIQAMVSKRDNIVSQYPYQAWDPVPPLSNSTSGVLIRHEKLLLQINTEREMGNMDYKL GQVSIHSVWLGNNITPLREEEWDEDEEDESDVHVASSPPTSPVNSRKHRAGVDIHSCSQF LLELYSQWILPVNSGKKTPVVLVSEVVRSLLAVSDLFTERTQFEMMYNTLTELQKIHPAE DEILNQYLVPAICKAAAVLGMDKAIAEPISRLLETTMRSTHMPSRIGALHGILYILECDL LDETAKQLIPTICDYLLSNLRGIAHCVNIHNQQHVLVMCATAFYLIENYLLDVGHEFTAG IIQMCGVMVSGSEESTPSIVYHCVLRGMERLLLSEQLSRLDGEALVKLSVDRLNMHSPHR AMAALGLMLTCMYTGKEKSSPDRSSDADPTAPDSESVIVAMERVSVLFDRIRRGFPCEAR VVARILPQFLDDFFPPQDVMNKVIGEFISNQQPYPQFMATVVYKVFQTLHNTGQSSMVRD WVMLSLSNFTQRTPIAMAMWSLSCFFVSASTSAWISALLPHIISRMGKSEQVDVNLFCLL AMDFYRKQIDEELDRRAFQSVFEMVATPGTPYHQLLSCLRNIHQVAQI NT seq 9327 nt NT seq  +upstreamnt  +downstreamnt atggcaaccatggagaaactgatgaaggccttcgagtcactgaagtcattccaacaggga ccgtccagcgaggagccgggacagaaacagaagaaagaatctgccacaaccaaaaaggaa cgcgtaactcactgcttgaccatatgtgaaaacattgctgcacagtctcttcggaactcg ccagaatttcagaagttgctggggattgcaatggaaatgtttttgttgtgttgtgatgat gcagagtcagatgtccgaatggtggcagatgaatgcttaaataaaattattaaggccctg actgattcaaatctgccacggttacaactagaattgtataaagaaattaaaaagaatggt tcatcaagaagcttgcgggctgcgctctggagattcgctgagctggctcaccttgtccgt ccacagaagtgcaggccgtatcttgtgaatctgcttccctgcctggccaggatcagcaag cgatcggaagaatctgtgcaggagacgctggctggtgccgtgccaaagataatggcagct ttgggaaactttgccaatgacggagaaatcaagattttgttgaagacctttattgggaac ctaaaatcgagttctccaaccatgcgtagaactgcagccagctctgctgttggcatctgt caacattcgagaaaaactcagtacttctatacctggcttttgaatgtgattttgggtttt ttggtcccagtggaagaagatcgaccaactccacttgttctgggtgtgatgctcaccctg cggtacctgttacctttactgcgccaacaagtgaaagacaccagcctgcggggcagtttt ggtgtgactcggaaggaagctgagatctccccttccttggagcagcttgtacaggcgtat gaattgacgctgcactacacccaacacagggaccacaatgtggtgacggcagccttggaa gtgctgcagcagctgttccgcaccccccctcctgagctgctccgcaccctgaccaccgcc ggcagcattgccagagttagcatcgcgcgagacgatacctccaatcgccttcgcagcagc agtatagtggagctcataggcaaaatggtttctggagaagaagatggacttgaagatgat gcggagaccaggtcagaggtcagcgcgaccacttttccaggttcaatgaacagtgaggga accggtgaagtgccatcatcttctggtgcctctaccttggggtccacaagcccggtggct gattctgcagggaatgatatcatcaccgagcagccacgatcccagcacacgctgcagtcc gcagagtctgctgacctcaacagctcggcaacatcggacctgaccggcctgacggtggag ggagcggctgacgaaaccctgagccgcagctccagccagatcagcaccatccagtcagac accaacgcagacccgaacgacaggaccaaccaggcgacgtctccgctcagtgagagctcg cagaccaccgagggcccagattcggctgtgaccccgtcagacagctcagaacttgtacta gatggaacggagagtcagtattcagcaatgcagattggacaacttcaagatgaggaggag gataccttaaacaccacaggagatgctctactagaaagcttcacaacttccactcttgca gtaaacaaatctcatttgttaagtcacatgggccacagccggcaatcctctgacagcagt gttgatcgttttgtgtcgaaggatgactgcgttgagtcagcagatcttgaaaccaagcct tgccggataaagggagacattggccattacactgatgagaatgcggcacctttagtccac tgtgttcgtctccttagtgcatcttttcttttaacgggtcaaaagaatggtctgattcct gataaagaagtcagagtgagtgtcaaagcgttggcagtaagttgtgttggagcagccatt ggacttcatcctgaagctttcttcaacaaactgtacaggacttcacttgaagttttagag agtcaagaagaccaatgcatatcagatattttgaaatatgtcaaccatggggatccacag ataagaggagccacagcactcctctgctcaacattcattcactcggctctcacaaagact cgatttaatccagaaagctggcttgctgtggtacaaggagctacagggtatggcttcact ttggaggattgcgtccctttactccagaaaaccctgaaggataaatcatctgtaacttgc aaaatggcttgtgctgccgtaaggcaatgcatcacaagcctgtgcaacagcagttacagt gagctgggattacaactcatcatcgacctcctcaacttgaaaaataattcttactggtta gtgaggactgaactcttagaaacgctggccgagatggacttcaggttagtaagcttcttg gaaaggaaaacagtggaccttcacaggggtcaacatcactacactgggatgctgaaactt caggagcgagccatcaataatgtcatcattaatctactgggagatgaggatccacgggta cggcatgtggcagccacaaccctcgttaggcttatccctcgattattttttgactgtgat caggggcagtcggatcctgtggtagcagtagccagagatcaaagcagtgcctacctgcag cttctcatgcatgagacccaatctacttctcactttgcagtgagtgcgatcaccagaacg tacagaggattcaacatttcagagagtaccactgatgtgacaattgagaacaatctctct cgtgttatcactgcggtgtctcatgcattaacctcgtccacttctcgagcccttatactt ggttgctgtgaggttttatgtttgctctccttgaacttccctgtgtgtaattggagcatt ggctggcactgtggatatacgaccagcagttcgcaagcatccagagtcaatctctacaag aacagggggcgttcattcagtttatctcagaacagtccaaccgatgactcccgcaaaagc tgtactgtggggatggtcaatatgatactgtctctactttcttcagcctggtttcctttg gacctttcttctcatcaagatgctttaatattatctggaaacttgctggctgccattgca ccgaaatctttgaagaatccctgggccaatgaagatgataccagtgcgaccactaaaatt gaagagccatggcctgccttggctgacaggtcgttggtcgggatggtggagcaactcttt tctcatctgatgaagatcatcaacatatgtgcacatgtgattgatgatgttacacctggc ccagtactgaaggcaactctcccatctctctcgactgcaccatcgctcagccctatccgg cgcaagaccaaggagagggagtcagcagaacagatggctgcacccatgagtcccaagaaa agtaccgagtccagtccagctgccaggcctgcagatgctgtgggcattgcaccaactagc aagtccacgtccctgggtagtttctaccacctgcctccatatctgaagctgcacgatgtt ctgaaggctacatacgcaaactacaaggttactctggaccttcagaacaataacgagaag tttggcagcttcttacgggcagcattggatgttttgtctcagcttctggagattgcaaca cttccagacattgggaagtgtgtggaagaaatccttggctatctgaagtcttgtttctgc agggaacccatggcagccacagtctgcgtacagcagctattgaagacgctgtttgggaca aacctcgcatcgcaatatgatggctcctcctcgcaccccggcaagtcacaggggaaggtg cagcgcctgggctcgtccagtctgaggccgggactgtaccactactgctttatggcgccg tacacccacttcacgcaggcgctggccgacgccagcctgaggaacatggtccaagcggaa cctgagcaggacacgtccggttggtttgatgtactgcagaaggtttcatcgcaactgaag gttagcatgacgaacgtgacaaggcatcgagctgacaagaatacgatacacaactacatc cgcctctttgagcctctggtcatcaaggccttgaagcagtacaccacgaccacctccgtc catctgcaaaggcaggtgcttgacttgttggcccagcttgtgcagctccgggtcaactac tgcttgcttgactccgatcaggtgtttatcggatttgttctgaagcagtttgaatacata gaagtgggccaattcagggaatccgaggccataattccaaatatatttttcttcttggtg ttgctatcatatgaacgctatcactccaaaccaatcattggaattcccaaaattatccaa ctgtgtgacgggatcatggccagtggtcggaaagccatcacacatgcaatcccggcactc cagcctatagtacatgatctgtttgtgctgcgagggaccaacaaagccgacgctggaaag gagttggacacacagaaggaggtggtggtttctatgctgctgaggctcatccagtaccac cagagctgcaataaacatcttgaaatggtgctggagatgttgattctggtgttacaacag tgccacaaagagaacgaagataagtggaagcgcctttctcggcagatagctgacatgatt ctgccactgctggtgaaacagcagatgcaccttgattcacatgaggccttaggagtgctg aacaccttgtttgagacagtggcaccctcgtctttgcgccctgttgacatgctgctgaag agtatgtttgctatgcccgccaccctggagtcagttggaacggttcaactttggatctcc ggcatccttgccatcttgcgggttctgatctctcagtccactgaggatattgtcctttcg cgggttcaagagctgtccttgtccccatatttgatttgctgccagaacataagcaggttg agggacacagggaatcaaacgttcccaacagaggagcatgaggaagacatgcaaaacaaa catctgccggaagaaacctttgcaagattcctgctgcagctggtggggatactcctggag gacattgtgaacaaactgctgaaggtggacatgagtgagcagcagcactccttctattgt caacaggtcggcactctgctgatgtgcctgatacacatcttcaagtcaggaatgtttcga agaatcactgcagctgccactaagttaattatgggaaatggcagtgatgggagcttctac acattggagacattgaacaacttggttcagaccatcatccccactcatccctctctcgtg ctgctttggtgccagattttactgctcgttaattacacaaattacaactggtggtcagag gtgcatcagaccccaaagagacacagcttgtctcgcacaaaactgctgaatcctcagata tcagaaaacggagcttcaaaatcagtctctaaattgggcatgtgcaatcgggaaattgtt cgaagaggcgcactcattctcttctgtgattatgtgtgtcaaaatcttcatgattcagag cacttgacttggctgatagtcaaccatgttcaagatctcatcaatctttctcacgaacct ccagtgcaagactttatcagtgctattcatcgtaactcagctgccagtgggcttttcatt caagctatccagtctcgatgtgacaatcttgcaacaccaaccatgttaaagaagaccctg cagtgtttggagggaatccatctcagccagtctggagcagtcttgatgctgtacatcgac aagctcatcagtacccctttccgagtgctggcccgaatggtggacacactggcctgccgg cgagttgagatgcttttggccgaaagtttgaagaatagtgtggcccaagtaccgcgggaa gagttggaaaggattcagcggtatctgcaaaccacttgcctcgcgcaaagacaccaaaga ttgtattccctgttggacaggttccgggcaactgttgccgccgacaccgttagtccgtct ccaaatgtaaccactcacccgctggacggggacaagctctctgacatagaatctatcgtc gtggacaaagattggtatgtgttacttatcaaattccaatgctgcaatcgctcaaataca gctttaatggagtgtactgaattacttgataaacttcctgaagatgacctccactctatc atgacaactaaggatttcaacttgaacctgctgacaccatgcttggccctgggtttgcaa ggaatctgtacagaccagactagcgtgctgtttgaaaccgccaggaaagttaccttggat cgcgtgacattccatgtccagcatcttcccagcaaccaacaggtgtggcaaagcctgtgt cctttgcccaatccctcccattggaataagattggcgagctttatggagatgtgcatttc tatcattccgtcattggtctgtgcagtgcattggcccagtaccttctgtctcttcccaag ctaccaccatctctgcagattccgcctgacaatgaggctgatataaccagtttcatggtc atgtctttggaggcactgtgttggcacttgctgcaggatcaggttccactgagtctggat ctacaagctgctctggattgttgctgtttagtgttacaacagccctccatttggaacctg ctagcatctgctgcctatgtaacgcaagcctgttcggttatcaactgcatccagttcatc attgaagcaatggctgttgaaccaggagaacaccatcttctccatgaagagaggagaaaa tcaaatgctgacaggatggaggatgaagagagtgcaaatgtgtctgaaagatccaagtac attacaaaggcctgcaacgtgatgactgagatggtggaatctctccagacggtgttatcc tttggacatgccagcaactatcgaatcccagcgttcttgaacccaactctccggaatatc ggtatcagtctagccaggctgcctctggtcaatagttacactcgcgctcctccattggtc tggaaactgggatggtcacctcgggttgggggtgaatttggtacgacactccctgaaatt cccgtcgagttccttcaggaaaaagaagtcttcaaagagttcatctaccggataaatgtt cttgggtggaccagtcgcactcagtttgaagaaacctgggcaacccttcttggtgtgctc gtgactcagcctctagtgatggatcaggaagaagaggtcccacaagaggaggatacagag agaactcagatcaacatccttgccgtgcaagcaataacatcgttggtgctaagtgctatg tcaattccagtggcagggaatccagccacgagctgtcttgaacatcagccccgtaataaa gctcttaaggctctggataccaggtttggaagaaaactgagtgccatccggggaatagtg gaacgagaaatccaagctatggtatcaaaaagggacaacattgtttcgcaatatccttac caagcctgggaccctgtgccacctctctccaattcaacgtcaggtgtcctgataagacat gaaaaacttctgctgcagataaacacagagcgggaaatggggaatatggattataaactg gggcaggtctccattcactccgtttggttgggaaacaacataacccctttgagggaagag gaatgggatgaagatgaagaagatgagagcgatgtgcatgttgcatcctcgccgcccact tcaccagttaattccaggaagcatcgggctggagttgacattcattcctgttctcaattt ctgttggaactctacagtcagtggatcctccctgtaaattctggcaagaaaaccccagtc gttctggtcagcgaggtggtgagatcgcttttggcggtctcggatctgtttaccgagagg acacagtttgagatgatgtacaacactctgactgagcttcagaagatccatccagcggaa gacgagattctaaatcagtatctggtacctgccatctgcaaagcagcagcagttctgggc atggacaaggccatcgcagagccaatcagtcgcttgttggagaccaccatgcggagcact cacatgccatctcggataggtgcactacacggcatcctctacatcctggagtgtgacctg ttggatgagacagccaagcagctcatcccaaccatctgtgactatttgttgtccaacctg cgtggaatagcacactgtgtcaacatccacaatcagcagcatgtgttggtgatgtgtgca acggccttttacctgattgagaactacctgcttgatgtggggcatgaatttactgcaggc ataatacagatgtgtggagtgatggtctctggcagtgaggagtccaccccttccatcgtc tatcactgcgtcttgcgtggaatggaacgactccttctctcggagcagctctcacgtttg gatggagaggccctggtgaaactcagcgtggaccggttgaacatgcacagtccacacagg gccatggctgccctgggtctgatgttaacctgtatgtacacaggcaaagaaaagagcagc cccgatcgaagttcagacgctgaccccacggctcccgatagcgagtctgtcattgtagcg atggagcgggtttctgttctgttcgacaggattcggaggggtttcccctgtgaggcgcgg gtggtggcacggatcttgccacagttcctcgacgacttctttccacctcaagatgtgatg aacaaagtaataggggaatttatttccaatcaacagccctatccacaattcatggccacg gtcgtttacaaggtgtttcagacattacataatactggacagtcttccatggtgagggac tgggtaatgttgtcactttcaaacttcacacagagaactccgatagcgatggccatgtgg agcctgtcctgtttctttgtcagtgcatcaaccagcgcgtggatctcagctctccttcca catatcatcagccgaatgggtaaatctgaacaagtggatgtgaatctcttctgtttactg gccatggacttctataggaagcagattgacgaggagttggatcgccgtgccttccagtct gtgtttgaaatggtggcaactcctggcactccgtaccatcagctcttgtcctgcctgcga aacattcatcaggttgctcagatctga

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