Leucoraja erinaceus (little skate): 129695394
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Entry
129695394 CDS
T09122
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129695394
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129695394
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
129695394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
DUF5693
TssC
Motif
Other DBs
NCBI-GeneID:
129695394
NCBI-ProteinID:
XP_055488277
LinkDB
All DBs
Position
3:complement(24182775..24322214)
Genome browser
AA seq
1820 aa
AA seq
DB search
MAEAPATQGVARSRTSSVREQKPRGQNRGGRENVREPNPDEEEPVGPVEEGEDNLDRESK
ESLDEENEDSLDEKTLKEISPSSSESEEEEDFGDVEKNPAQIWKWLASYLTKIFCKFQMT
SLLRDFVESEFFVIDGDSLMTMYIHNAMVDGEQNLHFFHLVECFLFDLIQKQATFVITFF
KDMECIWNHSCSCLTLRTALILHLQRNTNITIYTEFSNCFDPKWENFLGENQPYFVMISD
KAHLQERGQHHSTGLFHNLMLHTLGNGINVVITSGISQDILRVHGYHQTSNASVILNFQK
YKADLKRAHGGLLRCAPAFHSKVFCAANENELMERLQSEISQSYSALKLLWPKGADVRRI
VCAVSCSVALKIYGHMMAVDNSTGSMQGVSADEEEQREKLSVEGATEFCRVYCLHVALLC
KLPLAQRSLKRNAKWKKTAFPFLSLRRMTEFLVLKKLAFAQHGAADMTYLTDMNDQQLFR
SVATICSERPGSEARLGREIGSEYRDIWEAVARISPALDVGSTFPVTCSPHLLSMPTVST
PSGHREQPIPSIGLIPVSSEVVEEYLGEMLNQMNQLHSEDPTVASLQKLREFDERLHWHS
SRPLTLSFQERMGQLSTDPEERKKMLRQKQKLVVFERLYAESLNENAELRIVTDPAEAAK
TKSKCPPHPSKGKGMKPEKKKRSECIIEDQKKKKMLEEERRAKEQWNFIQETLGKDTTQP
IEERMKTLDKFLKTCVSDQVKFDAEMEGVKYCYKAWEEHYRSTAEPLKDVKNAAILMQRI
HTVLDRYEELLTPKQLTHLASYLQQLGFLNLRDTLMQRVDTHQLQKEKENKSLARDPKFP
VGLGAARFQLKHMGPFLIRDVRNDPDPRVKHFIPDTWQRELLDAVDSNESAVIVAPTSSG
KTYASYYCMEKVLRSSDDGIVVYVAPTKALVNQVVASVYGRFTKNLPQGKVVCGCFTRDY
RSNVDNCQILITVPQCLEILLLSPPKQDWAKKIQYVIFDEVHCLGGEIGAEVWEHLLVMI
RCPFLALSATISNPQDLTQWLQSVKDYWEGAECSPEASSSANSKTKRKINRPTERQSFKV
RLVIYGERYNDLEKFVCDFEGGEYKFVPYHPCAALTVDHIVKYGIPSDLALSPAECLRLY
DTMSNVMRGWPRMQELEPEEYKSFKNKIVIKKSDVREYEAELKKELTEWIEKGWRYEVKD
VLMMLEPEVEGNFGKAHSSNYPLLVESLQKRNGLPAIFFIFNISLVEEFANSILKHLQTK
EESRMKPDDNKVKQQMEKRIKELRKYLQKEDKPMHLSRNQEEKLSQLRTEYDLLLTKYQL
LQEIPPDCTFAQITAADREFMDKVFDRMQWVFGFSHFREMMRRGIGCHHRSLNKKFRQGV
EMLFRSGVIKVVSATSTLALGINMPCKTVVFLHDSVHLDSLTYRQMAGRAGRRGMDNVGS
VMFHNVPLSKVKRLMKANVPQLRGQFPVTITFILRLMLLAAKSSDKTDAKAKVLSVLRYS
LMTFNQPQKQIIVKYYFLFTLQFLLRKCFLDRECQPQGFAGLVMHLHYHEPANFVLIHFL
MQGLLHQVCRPTKKCSKTFSEDVMETLVLILANLFGRRYFPPFFLEQKPSFQQSKVFLND
LPKEFAVAVNEYNRNALHVFGNFLLTISRQVDLEEEFKLPLTNTSFMRSQVSEVTEFITD
LSKCLNRQVTGISPFACLSGHTDHDLFNNYDLDKIIFRTLGIHMNNIPILPLRRYDRQGR
HMPLNAYALDFYKHGSLHALSKDNGINRGDAYALIKDFTFVISAISVSLIERSESVNDPV
VLAFEQLNKTYNKKFRAVWS
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagctcctgcaacccagggcgtcgctaggtcaaggacatccagtgtcagagag
caaaaacccagaggtcaaaatagaggaggtcgagaaaatgttcgggaaccaaatccggat
gaggaagagccggtgggtccggtcgaggaaggcgaggacaacctggacagagaaagtaaa
gagagtctggatgaagaaaacgaggacagtctggatgagaaaaccttgaaagagatctct
cccagctcctcggagtcagaagaggaggaggactttggggatgttgaaaagaatcctgcc
cagatttggaagtggctggcatcatatttgacaaaaatattttgcaaattccagatgaca
agcttgctccgtgactttgtcgagtcggagttctttgtcatcgatggcgattctttaatg
acgatgtacattcacaatgcaatggtcgatggtgagcagaacctgcactttttccatctg
gtggaatgcttcctgtttgacttgatccaaaagcaggccacgtttgtcatcacgttcttt
aaggatatggaatgcatttggaaccatagttgctcctgcctcacgctccgcaccgcactg
attcttcacctgcagcgcaacacgaacatcacaatttacacagagttttccaactgcttt
gatccaaagtgggagaacttcctgggtgagaaccagccctattttgtgatgatctctgac
aaggctcacctccaggaacgggggcagcatcattccacgggattgttccacaatctgatg
cttcacacactagggaatggaatcaatgttgtcatcacatcaggaatctcccaggacatt
ctcagagttcatgggtatcaccagaccagcaatgccagcgttattttaaactttcagaag
tacaaagcggatctgaagcgagcacacggagggctgctgagatgtgccccggcgttccac
agcaaagtgttttgtgcagctaatgaaaacgaactgatggagagactgcaaagtgagatt
tcccagagctactcagctctgaagcttttgtggcccaaaggagcagatgtccggagaatt
gtatgtgctgtgtcttgttctgtggctctgaagatctatggccatatgatggcagtggac
aactccacgggaagcatgcaaggagtttcagccgacgaggaggagcaacgtgagaaacta
tcggtggagggagcgactgagttctgccgagtgtactgccttcacgtggctcttctctgt
aaactacccttggcacaaagatctctcaagaggaatgcaaagtggaaaaaaactgctttt
ccattcctgtcactgaggaggatgacggaattcctggttttgaagaagctggcttttgcc
cagcacggggcggctgacatgacgtacttgactgacatgaacgatcaacaactcttcaga
agtgtagccacgatctgctccgaaaggccaggatcggaggcccgattggggagggagatc
gggagtgaataccgagacatctgggaagcagtggccaggatttctccagctctggatgtt
ggatctactttccccgtgacgtgctctcctcacctactttcgatgcccactgtctccaca
ccatcaggccaccgagagcagccaattccctccattggtttaataccagtgagctcggaa
gtcgtggaagaatatctcggggaaatgctaaaccaaatgaaccagcttcacagcgaggat
cccaccgtcgcatcactgcagaagctcagagagtttgacgaaaggttacactggcattcg
agcaggcccttgactttatcctttcaagagcggatggggcaactttccacagatccagag
gagaggaaaaagatgttacggcagaaacagaagctcgttgtgttcgagaggctttatgca
gaatctctgaatgaaaacgcagagttgaggattgtcactgatccagccgaggcagcgaag
accaagtctaaatgtccgccgcatcccagcaaggggaagggcatgaagccggagaagaag
aaaaggtctgaatgcatcatcgaggatcagaaaaagaaaaaaatgttggaggaggagagg
agggcgaaggaacagtggaacttcattcaagagacccttgggaaagacacaactcagccc
atcgaggagaggatgaaaacgctggacaaattcctgaagacttgtgttagtgatcaggtg
aaatttgatgcagagatggaaggagttaaatactgctataaagcatgggaggaacattac
agatctacagcagagcccttgaaagacgtgaaaaatgcagccattttgatgcaaagaatc
cacactgttctggatcgatatgaggagctgctaactcctaaacaattaacccacctggcc
agttacctccaacaactcggattcctcaacctcagagatacactgatgcaaagagttgat
acgcaccagctgcagaaagagaaggaaaacaagtcgctggcaagagatcccaagtttccg
gttggattaggagcagcccgtttccagctgaagcatatgggtccttttctaatccgggat
gtaaggaatgatcctgatcccagggtgaagcatttcataccagacacctggcagagagag
ctgctggacgctgtggatagcaatgaatctgcagtcattgttgctcccacctcgtctggt
aaaacctacgcatcctattactgcatggagaaagtgttgagaagcagtgacgatggcatt
gtggtctacgtggcacccaccaaggctcttgtcaatcaggtagtagccagtgtctacggg
aggtttaccaagaacttacctcaaggaaaggtggtgtgtggatgtttcaccagagactat
cggagcaacgtcgataattgtcagatcctgattacagtaccacagtgcttagaaattctc
ctgctctctcccccaaaacaagactgggcaaaaaaaatccaatatgtgatttttgatgag
gtgcattgcctgggtggagagattggagcagaggtttgggaacatctgctggtgatgatc
cgttgtccattccttgctctgtcagcaactatcagcaatcctcaggatctcacacagtgg
ctacagtcggtgaaggactactgggaaggagcagagtgcagtcctgaagcatcttcttca
gcgaactccaagaccaagaggaagatcaatcgacccactgagaggcagtccttcaaagtg
agactcgtcatttacggggaacggtacaatgacttggaaaagtttgtgtgtgactttgaa
ggtggtgaatacaaatttgtgccctatcatccctgtgctgccttaacagtggatcacatt
gtaaagtacggcatcccgtctgacctagcactgtctccagctgaatgtctcagactctac
gacacgatgtcaaatgttatgcggggctggcccaggatgcaggagttggaaccagaggaa
tacaagtcttttaaaaacaaaattgttatcaagaagtccgatgtgagagaatatgaggct
gaactgaagaaggaacttaccgagtggattgaaaaggggtggagatatgaggtcaaggat
gtgctgatgatgttggaaccagaggttgaagggaattttgggaaagctcactcaagtaac
tacccacttctggtggaatctcttcaaaagcggaacggtcttccagctatttttttcatc
ttcaatatatcactggttgaggaatttgctaatagcatactaaagcacctgcagacgaaa
gaggaaagcaggatgaaaccagatgataacaaagtgaaacagcagatggaaaaaaggatc
aaggagctacgaaagtacctgcaaaaagaggataaaccgatgcatctcagcagaaatcaa
gaggaaaaactgtcgcaattgcggacagaatatgatttgttactgacgaaatatcaatta
cttcaagaaatccctcccgactgtacgtttgcccagattactgctgcagatcgagagttc
atggacaaggtttttgaccgcatgcagtgggtgtttggctttagccacttccgagagatg
atgcgccgaggaattggttgccaccatagatctctgaacaaaaaatttcggcaaggcgtg
gagatgcttttcagaagcggtgtaataaaggttgtcagcgccacatcaacccttgctctg
ggaatcaacatgccctgcaagactgtcgtttttcttcacgattctgtgcatctggattct
ctcacctacagacagatggcgggaagagcaggtcgtcgagggatggacaatgtaggaagc
gtgatgttccacaatgtgccgttatccaaggtgaagaggctgatgaaggccaatgttccc
cagctgaggggccagttccccgtgactataaccttcatcctccgcctcatgctgctggct
gccaaatctagcgacaagacggatgccaaagccaaggtactttccgtcctccgatactcc
ctaatgaccttcaatcaaccccaaaaacagattatagtcaaatactatttcctcttcact
ctgcagttccttctcagaaagtgtttcctggaccgagaatgtcagcctcagggctttgcg
ggcctggtgatgcacctccactaccatgaacccgccaactttgtcctcatccacttcctg
atgcaaggcctcctgcaccaagtctgccgtcccacgaagaaatgttcaaagactttttca
gaagacgtgatggaaactttagttctcatcctggccaacctatttggcaggcgctatttt
ccaccattctttttggagcagaagccttctttccaacagtccaaggtattcctgaacgat
cttcccaaagagtttgctgtcgcagtcaatgagtacaacaggaatgctctccacgtcttt
ggaaacttcctgctcaccatctcacggcaggttgacctggaagaggagtttaagcttccc
ctgacaaacacatcattcatgcgttcccaggtgtcagaggtcactgagttcatcacagat
ttgtctaaatgcttaaaccgtcaggttacaggaatctcaccgttcgcttgcttgtccggg
cacactgaccacgatctgttcaacaattacgatttagataaaattattttccgcacactt
ggtattcatatgaataacatccccattctgcccttgaggcgctacgataggcaaggaaga
cacatgcctctcaacgcatatgctcttgacttctacaaacacggcagcttgcatgctttg
tccaaagacaacggaataaataggggggatgcctatgccctgatcaaagatttcacgttt
gtaatttctgcaatcagcgtttctctaatagaacggagcgagagcgttaatgaccctgtt
gtattagctttcgagcaactcaacaagacctacaacaaaaagttccgtgctgtttggagc
taa
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