Leucoraja erinacea (little skate): 129695417
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Entry
129695417 CDS
T09122
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
leri
Leucoraja erinacea (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
leri01009
]
129695417 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
leri04121
]
129695417 (sh3rf1)
Enzymes [BR:
leri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129695417 (sh3rf1)
Protein phosphatases and associated proteins [BR:
leri01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129695417 (sh3rf1)
Ubiquitin system [BR:
leri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129695417 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-RING_4
zf-C3HC4_4
Prok-RING_4
zf-RING_11
zf-rbx1
zf-Nse
Motif
Other DBs
NCBI-GeneID:
129695417
NCBI-ProteinID:
XP_055488317
LinkDB
All DBs
Position
3:27444941..27611312
Genome browser
AA seq
880 aa
AA seq
DB search
MDESVLLDLLECPVCLERLDATAKVLPCQHTFCRRCLQGILSSRSELRCPECRTLVDCGV
DELPTNILLVRLLDGIKHRPRRSGNSGVNGNNNVNGTTRVQSNGVVSANCSIALRDLQGT
HRVQARSPPVRGIPQLPCAKALYNYEGKEPGDLKFNKGDVIILRRQVDENWYHGEVNGVH
GFFPTNFVQIIKSLPQPPPQCKALYDFEVKDKEADKDCLPFSKDDILTVIRRVDENWAEG
MLGDKIGIFPISYVEFNSTAKQLIQLDKPSASPAGGGDSGEGSSNASGATQSNTGQKPAD
ITKKNTKKRHSFTSLTMSNKASQSSQNRHSMEISPPVLISSSNPTAAARISELGGLSCSA
PSQVHISTTGLIVTPPPSSPVNTVPPCAFPPEGTYSVAPGENHPPPPPPPPSNATVTTCA
SSSPRPSVGSVDQVAHPRPQVRPNMYVALYPYTPRKEDELELRKGEVFLVLERCQDGWFK
GTSMHTGKIGVFPGNYMAPVTRTPPGTGQSKLSAVVTAQVGRGVTTVVPLPAVVSQSKSP
GNGVDFSRPISPTPPLPTAVISAAHIQATNPQAKVLMHMTGQMTVNQARNAVRTAVAQGQ
ERPMAAVTPMQTHSPASTISTTPVAHHQTVSLQHTQQGLQTIPPFTVVTAPTAARMGVVL
TSAASAITPPNVSATALEGEQLGVATCVIPAGPAAAPPTATAPCKLEKESREKKEKKGFL
KLLSGASTKRKSRPSPPSSPTLESEQAASETLLQGAVGPDVSSSVSHSRAGSCPVDTETI
GAMFETLHRKTASLDSGVPIAPPPRQPCSSMGSVQLESKAIPCERYRVVVSYPPQSEAEL
ELKDGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVESI
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtcggtgctgctggacttgctggagtgtcccgtgtgcttggagcggctggac
gccacggccaaggtgctgccgtgccagcacaccttctgccgtcgctgcctgcaggggatt
ctgagctccaggagtgaactgcgctgcccggagtgccggacactggtggactgcggggtg
gacgagctcccgactaacatcctgctggttcgcttgcttgacggcatcaagcaccggccg
aggaggtccggcaacagcggcgtgaacggcaataacaatgtcaatggtaccaccagagta
caaagcaacggggtcgtctctgccaactgcagcattgcgttgcgggatcttcagggcaca
caccgggtgcaggcacgtagccctccagtcaggggtatacctcaactaccgtgtgccaaa
gctctctacaactatgaaggaaaggagcctggtgatctcaagttcaataaaggtgacgtt
attatcctacgaagacaagtggatgagaattggtatcatggggaagtcaatggtgtccat
ggatttttccccaccaattttgttcagatcattaaatcgttacctcagcctccgccacag
tgcaaagcactttatgactttgaagtgaaagacaaggaggcagacaaagactgcttacct
ttctcaaaggatgatatcttgacagtgatacgcagagtggatgaaaactgggctgaagga
atgttgggagacaagataggaatattccccatttcatatgttgagttcaactcaacagca
aagcagttgattcagctggacaaaccttcagcctccccggcaggaggtggcgattcagga
gaaggaagcagcaatgcctcgggggcaactcagagcaacactggccagaagcccgcagac
atcaccaagaagaacaccaaaaaacggcattcgttcacctcactcaccatgtccaacaaa
gcatcccagtcgtctcaaaaccgccactccatggagatcagcccccctgtcctgataagc
tccagtaacccgactgctgccgctcgcattagtgagttgggtggactctcctgcagtgct
ccttctcaggtccacatcagcactactggtttaatagtcacaccaccacccagcagtcct
gtcaatacagtacctccttgtgccttccctccagaaggcacctactcagttgctcccggg
gagaaccacccaccaccgccacctccacctccttcgaacgctactgttacgacatgtgct
tcaagttccccacgaccatctgtgggatctgtggaccaagtggcacatccaaggcctcaa
gtgcggccaaatatgtatgttgctttgtatccttacacaccacggaaggaagatgagctt
gagttgcgaaagggtgaggtatttctggtgcttgagcgttgtcaagatggatggttcaag
ggaacgtcaatgcacacaggcaaaatcggtgtttttcctgggaactacatggctccagta
acaagaacgcctcccggaacaggacagtcaaagttgtcagcagtagtaactgcgcaggtt
gggcgaggtgtcaccacagttgtgcctttgccggcagtagtgtctcaatccaaaagccca
ggaaatggcgtggacttcagcagacccatcagtccgacgcctccgctccccactgcagtg
atatctgcagcgcatatccaggccactaacccacaggccaaagttctgatgcacatgact
ggtcaaatgacggtgaaccaggctcgcaatgcagttcgaacagccgtggcccagggccag
gagaggccgatggccgcagtgacccccatgcaaacgcacagcccggcctccaccatctcc
acaacaccggttgctcaccatcagaccgtctccttgcagcacacgcagcagggcctgcag
accatccctcccttcacagtggtcacagctcccaccgcagccaggatgggcgtggtgctc
acctccgccgcctccgccatcactcctcccaatgtcagtgccaccgccctagagggagag
cagttgggggttgccacttgcgttattccagcaggccctgctgccgctccccccacagcc
accgccccatgcaaacttgagaaggagagcagagaaaagaaggaaaagaaaggtttcctg
aaactcctgtctggcgcgtctacaaagcgaaagtctcgaccctcgcctccgtcctcgccc
acgttagagtctgaacaggcggcttcagagacattgctgcagggagctgtgggtccagac
gtctcttccagtgtgagccacagcagagctgggtcctgcccagtggacacggaaactatc
ggagcaatgttcgaaactctccaccgcaagaccgcttctttggattctggcgtgcccatt
gcccctcctccaaggcagccctgttcatccatgggttcagttcagctggaatccaaggct
ataccctgtgaaaggtacagagtggtcgtgtcctaccctccgcagagcgaggctgagctg
gaactgaaggatggtgacattgtattcgtgcacaagaagcgcgaggatggttggttcaag
gggaccctgcagcggaacgggaaaaccggcctcttccctggcagctttgtggagagcatc
tga
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