Leucoraja erinaceus (little skate): 129696043
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Entry
129696043 CDS
T09122
Name
(RefSeq) lipoxygenase homology domain-containing protein 1-like
KO
K19538
retinitis pigmentosa 1
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
leri03037
]
129696043
04812 Cytoskeleton proteins [BR:
leri04812
]
129696043
Cilium and associated proteins [BR:
leri03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
129696043
Cytoskeleton proteins [BR:
leri04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
129696043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PLAT
DCX
FGF
Motif
Other DBs
NCBI-GeneID:
129696043
NCBI-ProteinID:
XP_055489425
LinkDB
All DBs
Position
4:complement(38273291..38458430)
Genome browser
AA seq
1581 aa
AA seq
DB search
MADHLSLRQSQEKTRASKTDQTIYSHHFLIPNAVTSKKIYFYKSGDPMFSGIRMAINRRT
FKTFDSLLDDLSNKIPLPFGVRRITTPRGGNSVRSLSDLKDGQSYICSDQRKVKPINLEM
AKRKQHPWFISKSFHRDPSTEQSRIKVSKTFYEDSPQSTGIPKKLIIFKNGDPNFRRNLV
MNKQTVGTFDVLLNSITELMSFNVVQLYSTDGKKLETLYPVKNVLDAVVAAGREAYKPRK
YDISKLVLPHRLPPMTNRVHPNSVSKIDTRFRNKWKITVRTGDLPTAGTTAQVHIVLYGD
EGNSRIHLHRGGSHAKFQSGQKDVIIVCTVNTKNIGKLYKIRIGHNNTGKFPGWHCKSIH
LQNTSSGKEYHFNVNSWMDRNKGDGEVCREMPVLENGKEVFPVTDYEIFIVTGDLWNGGT
EANVYIVIYGKRGDTGSRQLLRSNNPLKFRKGQTDIFSLKAVHLGKPQKLVVGHDGLGAG
HGWFLEKITIKDSVKGSKGFLFPCHRWLDQGEEDGKIARELYVADNFTFPAKHELELRRK
EIYLSNQWAVEKWKFMAGRILQFYCKPIGKFIRLMPDGTVDATGEKDDHNALFEVSVPKK
GIQVFSSVVTPNLALAIGHNHVIALEGNETLCELTIHPKTNYSVILESVQIPGQIIAFNS
EGKPVVAPSKENPEIIKDFIVHVMNAFEDGAVLLLNTSLYQSLCITTKGACLGTGKQFKI
SYLLLHKVSPTVYMFESVQKPFKFIQMKNGKCDGQGIGDEFCQFRVQRNLENATISLESV
MSPGMYLGLLPDGNTRPFESSEGIHTMFYPQAINRIDGPTDFIYLRYFNERLFHSYFMCT
LYYNRFSSEPSELKEANERKLSPTVAKEKQIKSKSLGVLLEIKQEKSKKKTYIHSSLNEG
AWGCIWLKIFTNNMLLMFLLIGISPDTWKVVTQAGEAGTKAQVSMWVCGDKSTAGPIILK
ESNNTNPFISNQTDEFQVTLIHRSNSFFISFNLQINFKNVGRVFKIRIAHDGSSNQSDLK
LNKVWMEHLENGHILKFEADRWLSFHHDDGEILREFPVIREDTGKPIYPVMKYQVRIHTE
HLENDDSYLPIYICIYGKRGDTGLRYLYTFDHSAKLEHGQVCLWPDHKVDMLMIGFFQLE
AVSLGELQKVLLHTEANDKQPWFCEQVVIKEQDNNQLEYVFNCNRWFPYTLMDVLHTDIM
IPLSEIHEEMDSSPLEIEQEIHEETDSNPSEIEQDVREEMDSGPPEIEQVKSRISYMSND
ILLQVVSAVKSSPVYSLQLDESKDVASCSQLLVYVCYLDGEVMKEEDLFSEPLATTTRGE
DVFRMLEALIKHELGWERFVRVEIHEETDSSPPEIEQEIREEKVSSPPEITQGDKWEVLV
TTGNFKSAGTEATVIMHIYGDKGTSGPIVLGTGTHQLFKPQNTDVFQINPTDVGELYKIR
IGHDNVGEKPGWFVDDIKMKEVKTGRIISIPVNRWLDETQDDEDVWREFPISKPGEKPLP
VLLYYVHVFTGDKPEADTDDDVFINIFGERGDTGKRKLHKSQNSQIKFQKEQIDTFILEA
VSVGILKKIVIGHDGVKAGTV
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcacctgtctttacggcagtcacaagaaaagacacgtgcctcaaaaactgat
caaactatatattcacatcatttcctaattccaaatgctgttacgtcaaaaaagatttat
ttttataaaagtggagacccaatgttttctggaattaggatggctatcaaccgtcgtacc
tttaagacatttgattctttattagatgatttgtctaacaagattccattgccatttgga
gtacgaaggattaccacgccccgcggtggtaatagtgtgagaagtctttcagatcttaaa
gatggacaatcttacatttgctctgaccaaagaaaagtgaagccaattaaccttgagatg
gctaagaggaaacaacatccctggtttattagcaaatcatttcatagagatccgtctaca
gaacagtccagaattaaagtttccaaaacattttatgaggattcaccacaatccacagga
attccaaagaaacttatcattttcaaaaatggcgatcctaatttcagacgtaatctagtt
atgaacaagcaaaccgtgggaacctttgatgtactactaaattctattactgagctaatg
agttttaatgtggtacaactatacagtacagatgggaaaaagcttgaaaccctctatccg
gtgaagaatgtattagatgctgtggttgctgctggtcgagaggcatataagccgagaaaa
tatgatatttcaaaattggtcctcccccatagattaccacctatgacaaatcgtgttcat
cccaatagtgtgagcaaaatagacaccagattccgaaataagtggaagataactgttcgc
accggtgatctaccaactgcaggtacaactgctcaggttcacatcgttctctatggggac
gagggaaattcaagaatacatttacatcgtggaggttcgcacgcaaagtttcaaagtggg
caaaaagatgttataattgtatgtactgtaaacacaaagaatattggaaaattatacaaa
attcgcattgggcacaacaataccggaaaattccctggatggcactgtaaatcgatccat
ttacagaatacttcctcgggtaaagagtaccactttaatgtaaatagctggatggatcgg
aataaaggcgatggagaagtctgcagagaaatgcctgtgttggagaatggcaaagaagtc
ttcccagtgactgactatgagatcttcattgtaactggagatctttggaatggtggcaca
gaagccaatgtctacattgtgatatatggcaagagaggtgatacaggttcaagacagctt
cttaggtcaaataatccattgaagtttcgaaagggccagactgatatcttttcattgaaa
gctgtgcaccttggcaaaccacaaaaacttgtagttggccatgacggtcttggtgcagga
catggctggtttctggagaagattacaataaaagactctgttaaaggcagcaaaggattt
ctttttccatgccacagatggctggaccagggagaagaggatggtaaaattgcacgggaa
ctttacgttgctgataactttacctttccggcaaaacatgagctggaattgcgaagaaag
gaaatttatctctctaatcagtgggctgttgagaagtggaagttcatggcagggaggatt
ttgcagttttattgcaaaccaattggaaagttcatacgtctgatgccagatggcactgtt
gatgctactggagagaaggatgatcacaatgctctttttgaagtttctgtgccaaagaaa
gggattcaagtattcagcagcgtggttacccctaatctagctcttgctattggacataat
catgtcattgctttggagggaaatgaaactctgtgtgaattgacgatacatcctaagaca
aattattctgttatactggagtctgttcagattccgggacaaataatcgcatttaacagt
gaaggaaagcctgttgtggcaccgtcaaaagaaaatccagaaattatcaaggactttatt
gttcacgttatgaatgcattcgaggatggtgcagtgcttctgctgaatactagtctttac
cagagtctttgtatcactaccaaaggagcctgcctcggaacaggaaaacaatttaaaata
tcttatttgttgttgcacaaagtcagcccaacggtttacatgtttgagagtgtacagaaa
ccattcaaattcatacaaatgaaaaatggtaaatgtgatggacagggcataggagatgag
ttctgtcaatttcgggtccaaagaaatttagaaaatgcaactataagcctcgagtctgtg
atgagcccaggaatgtatcttggtcttctcccagatggcaacacaagaccatttgaatct
tctgaaggaatccataccatgttctacccccaggcaattaacaggattgatggaccaaca
gattttatttatttgcgttacttcaatgaacgtttatttcattcttatttcatgtgtaca
ctgtactacaacagattttccagtgaacccagtgaattaaaggaagctaatgaaaggaaa
ttgagccccacagtggcaaaggagaagcaaataaaaagcaaaagtttgggtgtccttttg
gaaattaaacaagagaagtcaaagaaaaagacatatattcatagttccttaaatgagggg
gcttggggatgcatttggctgaaaatatttacgaacaatatgcttttaatgttccttttg
ataggaatttctcctgacacatggaaagtggtgacacaggcaggtgaggctggcactaaa
gcccaagtttccatgtgggtatgtggcgacaaatctacggcaggaccaataattcttaaa
gaaagcaacaatacaaatccttttatttcaaatcaaactgatgagtttcaggtaacttta
atacatcgctcaaatagtttttttatttctttcaatcttcagatcaatttcaaaaatgtt
ggccgggtctttaaaatccgcattgcacatgatggttcaagcaaccagtcggacttgaag
ctgaacaaggtatggatggaacatttagaaaatggacacattttaaaatttgaggcagac
agatggttatcatttcatcatgatgatggagaaattttacgtgaattccctgtcatacgg
gaagatacaggcaagccaatttatccagtaatgaaataccaagtacgtatacatactgaa
catttggaaaatgatgattcatatcttcccatctacatctgcatctatgggaaaagagga
gacactggactccgttatctatacacatttgatcactctgccaaattggaacatggacag
gtatgtttgtggccagatcataaggtggacatgttaatgattggatttttccaattggaa
gctgtgtccttgggtgagctgcagaaagtgctcctgcacactgaagccaatgacaaacaa
ccttggttttgtgaacaagtggtcattaaagagcaggataacaatcaattagaatatgtc
ttcaactgtaacaggtggtttccatataccttaatggatgttttgcatacagatattatg
atcccactttctgaaattcatgaagaaatggattctagcccacttgaaattgaacaagaa
attcatgaagaaacggattctaacccctctgaaattgaacaagatgttcgtgaagaaatg
gattctggcccccctgaaattgaacaagtcaaaagtcgaatctcttatatgagtaatgat
attctgctgcaagtagtgagcgctgtgaagagcagtccagtgtattcattgcaactggac
gagtcaaaagatgttgcctcatgttcccaactactagtctacgtttgttacctcgacgga
gaagtcatgaaggaggaggacctgttctctgagccattggccactaccactcggggagaa
gatgtgttcagaatgctggaagccctcatcaaacatgagcttggctgggaacgatttgtc
agggtggaaattcatgaagaaacggattccagcccccctgaaattgaacaagaaattcgt
gaagaaaaggtttctagcccccctgaaattactcaaggagataagtgggaggtgttagtc
actactggaaatttcaaaagcgctgggaccgaagctactgtcatcatgcatatctatggg
gacaaaggaacgtcaggcccaattgtcttaggcactggaacgcatcagctattcaaacca
caaaatacggatgtatttcagattaatccaactgatgttggggagctatataaaattcgt
atcggccatgacaatgttggagagaaaccaggctggtttgtggatgatataaaaatgaaa
gaagtaaaaaccggacggattatcagtattcctgtcaaccgttggcttgacgagactcaa
gatgatgaagatgtgtggagggaatttcctataagcaaaccaggagaaaagccacttccg
gtactgctttattatgttcacgtgttcaccggtgacaaacctgaagcagacaccgatgat
gatgttttcatcaacatatttggtgaaagaggagacacaggcaaacggaaactacataag
tcgcaaaacagtcaaataaaatttcaaaaagagcagatagataccttcattcttgaggca
gtttctgttggaatacttaaaaagattgtaattggacatgatggtgtgaaagcaggtacg
gtgtaa
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integrated database retrieval system
