Leucoraja erinacea (little skate): 129696395
Help
Entry
129696395 CDS
T09122
Symbol
npc1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
leri04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
129696395 (npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
129696395 (npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
leri02000
]
129696395 (npc1)
Transporters [BR:
leri02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
129696395 (npc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
Patched
NPC1_N
Sterol-sensing
MMPL
Motif
Other DBs
NCBI-GeneID:
129696395
NCBI-ProteinID:
XP_055490231
LinkDB
All DBs
Position
4:complement(52484818..52526534)
Genome browser
AA seq
1277 aa
AA seq
DB search
MSVIVAPLLLLLATTLNLPERLVFAENTTCIWYGECGTDKATQKKYNCKYDGLPKPLPKE
GYELIQELCPNFQYGDVDLCCDVQQLQTLKDNIQLPLQFLSRCPSCFHNFMTFYCELTCS
PVQSLFVNATKFEPYIQNQTSITEVEYYIGSSFANAMYNACKDVQSPSSNEKALGLLCGK
DAKDCNATNWIQYMSTTQNAQTPFNIIPIFGDLPVGAMIPMNNKTKGCNESLEDGSPPCS
CQDCTLVCGPKPVLPPPPVPWTIFGLDAMAVIMWIFYLFFLLSFGGAVIGVWFCRKQRVV
SEYAPIMDASTSHSVNVNHDLDKMSCCEQLGAKSEALLRDIFSKWGSFCVRNPAPVIIFT
IVAIAVCSSGLVFMRITTDPVEIWSAPSSQARKEKYYFDTHFGPFFRTEQLIITAPHTNW
STFSPYPSGSDVPFGPPLSKDILHQVLDLQDAIQDLEASYKNESVQLQDICLAPLSPYNN
NCTILSVLNYFQNSHAVLDHSVGDYWFVYADYHSHFLYCSRAPASLNDTTMLHDPCLGTF
GGPVFPWLVVGGYNDEDYNNATALVITFPVINYHNDTEKLNKVLAWEKVFVDFLKSYNNS
NLSISFSSERSIEDEINRESNSDVKTILISYIIMFLYISIALGHIRSCANCLVDSKISLG
IAGIVIVLSSVACSLGIFSYAGIPITLIVIEVIPFLVLAVGVDNIFIIVQTFRRDKRLLN
ESIDQQIGRVLGEVAPSIFLSSFSETVAFFLGSLSTMPAVRTFSLFAGMAVFIDFLLQIS
CFVSLFGLDIKRQESNRMDIVCCVKQEKVDADHSEELLFRCFKYIYAPFLLNNWMRPIVI
SVFVAVLSFSIAVVNKVEIGLNQSYSMPDDSYLLDYFASMNKYFHAGPPVYFVIEEGHNY
TSPEGQNAVCGGVGCNNDSLVQEVYNAALLSNYTRVGFPPSSWIDDYFDWVKPQSTCCRV
YNNTETFCNATVHNPACVRCRPLTREGKQRPYGEDFMTFLPMFLSDNPNPKCGKGGHAAY
GSAVNLIDNNTGVGATYFMTYHTVLKTSADFIAAAKEARIIGQNITQAMGISGKGYRVFP
YSVFYVFYEQYFTIVNDTIFNLCTSLGAVFIVTTVLLGYEVWSAVMVCITIAMIITNMFG
VMWLWNISLNAVSLVNLVMCCGISVEFCSHIVRAFSVSTKKTRVGRAEEALANMGSSVFS
GITLTKFGGIVVLAFAKSQIFQIFYFRMYVAIVLLGAAHGLIFLPVMLSYIGPSVNKGKL
SVLHNHYKGTERERLLQ
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttatcgtcgcgcccttgcttctactgctggcgacgacgctgaatcttcccgag
cgcttggtatttgcagaaaatacaacatgcatttggtatggagaatgtgggacagataaa
gctacacagaagaaatacaactgcaaatatgatggcctgcccaaaccattgcccaaagaa
ggatatgaactcattcaagaattgtgcccaaattttcagtatggggatgtcgatctctgc
tgtgatgttcaacagctacaaacacttaaagacaatatacagctgccacttcagttcctg
tccaggtgcccatcttgttttcataacttcatgaccttttactgtgaactgacttgcagt
cccgttcagagcttgtttgtcaatgccaccaagtttgaaccgtacattcagaatcaaacc
agcatcacagaagtggaatactacattggatcaagctttgcaaatgccatgtacaatgcc
tgtaaagatgttcagtctccctcaagtaatgaaaaagctctggggttactttgtggaaaa
gatgcaaaggactgcaatgctaccaactggattcagtacatgagtaccacacagaatgcc
cagactcccttcaacattattcctatttttggcgatcttcctgttggtgcaatgatcccc
atgaacaacaaaaccaaaggctgcaatgagtcgttagaagatggctcaccaccgtgcagc
tgtcaggattgcacccttgtttgtggcccaaagccagtgctgccaccaccacctgtacca
tggaccatctttggtttggacgctatggcagtcataatgtggattttctatctgttcttt
ctgctctcctttgggggagcagtcattggtgtatggttttgcaggaagcagcgtgtagtt
tctgaatatgcaccgattatggatgccagcacgagccattctgtcaacgtcaatcacgat
cttgataagatgtcctgttgtgaacagcttggtgcaaaatctgaagctctcttgcgcgac
atattctcaaagtgggggtccttctgtgtgagaaaccctgctccagttatcatcttcacc
atcgtcgccatcgcagtctgctcttcaggcttggtgttcatgaggataaccactgatccc
gtggaaatctggtctgccccttccagtcaagcccgcaaggaaaaatattattttgacact
cactttggacctttctttcgcactgagcagctgattattacagccccacacaccaactgg
tcaacgttctccccatatccgtcaggatcggatgtgccttttggcccaccattgagcaaa
gatatattacaccaggtgctagacctgcaggatgcaatccaggatttagaagcttcttac
aagaatgaaagtgtgcagctgcaggacatttgcctggcacctctgtctccatataacaat
aactgcaccatcctcagtgtcctcaactacttccagaacagtcacgccgtccttgatcat
tctgtgggtgactactggtttgtgtatgctgactaccacagccacttcctctattgctcc
agggctcctgcttcacttaatgacacaacaatgcttcatgacccgtgtttgggaacattt
ggtggacctgttttcccgtggttggttgtaggggggtacaatgatgaagattataataat
gcaacagcactggtgatcacattccctgtaattaattatcacaatgacactgaaaaacta
aacaaagtcttggcttgggagaaagtatttgtggattttctgaaaagttataataattcc
aacttgagcatttcattctcgtctgaacggagtattgaagatgaaataaatcgtgaaagt
aacagtgacgtcaaaactattcttatcagctacattatcatgttcttgtacatctccatt
gcgttgggacacataaggagctgtgcgaactgcctggtggactccaagatctctctggga
atagccggcattgtgatagtcctgagctcagtggcctgttccctcggcatcttcagttat
gctggaatccccatcactctgatcgtcattgaagtcattcccttcctggtgctggcagtc
ggtgtggacaatatcttcatcattgtgcagaccttcaggagagacaaacggctgctcaac
gagtcgattgaccaacagattggcagggttctgggcgaggtggcaccaagtatcttcctg
tcgtccttctctgagactgtggcattctttctgggttccttgtccacaatgccggcagtc
cgaaccttctccctctttgccggaatggctgtgttcatagacttcctgctccagatatcg
tgctttgtaagtctcttcgggctggatatcaagcgacaagagagtaatcgtatggatatc
gtgtgctgtgtgaaacaagagaaggttgatgcagatcattctgaagaattgctgttcaga
tgcttcaaatatatctatgctccatttttattaaataactggatgcgccctatagtgata
tcagtatttgttgcagtcttgtcattcagcattgcagtcgtaaacaaagttgagattggg
ttgaaccagagctattcaatgcctgatgactcttacctcctggattactttgcatcaatg
aacaagtactttcatgccggccctcccgtttactttgtgatagaggaaggtcataattac
acctctcctgaagggcagaacgctgtgtgtggtggtgttggctgcaacaatgactctctc
gtccaagaagtttacaatgcagctcttctgagcaattacacaagagtgggcttcccgcca
tcctcctggattgacgattactttgactgggtgaagccccagtcaacctgctgcagagtc
tacaacaacacggagaccttctgcaacgcaacagttcacaatccagcatgtgtccggtgc
cgaccactgactcgagaggggaagcagaggccctacggtgaagacttcatgaccttcctc
cccatgttcctgtctgacaatcccaaccccaagtgtggcaaaggtggccatgcagcgtac
ggctctgccgtgaacctgatcgacaataacaccggtgtgggagccacttatttcatgact
taccacacggtgctgaagacatctgcagacttcattgctgctgcaaaggaggcacgaatc
attggccaaaacataacccaggcaatggggatctcggggaaaggctatcgcgtctttccg
tacagtgtgttctacgtattttatgagcagtatttcacaattgtgaacgacactattttc
aacctgtgcacgtcactgggagcggtgtttatcgtgacgacggttctgctgggctacgag
gtctggtctgcggtgatggtgtgcatcaccatagccatgatcatcaccaacatgtttgga
gtgatgtggctctggaacatcagcctgaatgctgtatcgctcgtcaatctggtcatgtgt
tgtggtatttcggtggagttctgtagccacatagtgcgggcattctctgtcagtacaaag
aaaaccagagtgggccgtgcagaggaagcgctggcaaatatgggcagctcggtattcagt
ggcatcacgctgaccaagtttggtgggattgtggtcctggcatttgccaagtctcagatt
ttccagatcttctacttcaggatgtatgtggcaattgtcctcttgggtgcagctcacggc
ctgatcttccttccagttatgctgagttatattggtccatccgtaaacaaaggaaagctt
tctgttctgcacaatcactacaagggtacagagcgggagagattattgcagtaa
DBGET
integrated database retrieval system
