Leucoraja erinaceus (little skate): 129696418
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Entry
129696418 CDS
T09122
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129696418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129696418
03036 Chromosome and associated proteins [BR:
leri03036
]
129696418
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129696418
Coactivators
SAGA/TFTC/STAGA complex
129696418
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
129696418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TMP_3
Motif
Other DBs
NCBI-GeneID:
129696418
NCBI-ProteinID:
XP_055490269
LinkDB
All DBs
Position
4:53594095..53675533
Genome browser
AA seq
668 aa
AA seq
DB search
MPAPGSPGAAPPPPGPPPPPSPAATLLNGGAAVAVVPAPAPAPAVARASVPVLQSLQVPA
GMVLVRSDSGQLVLVPQRAFAQAQAQAKARAQAQRAGSTSAAAPGTTHTVRISNVQTIRT
QTVANQMKPLAAQQTNQLQAPIQTNSLPQRITLVQSQPVTGAIATKSPSIVAAKQSTPVN
HLAAVRVVQTSAAPETLENVKKCKNFLATLIKLASSGSQSMEMSNNVKLLVQQLLDGKLE
AEEFTSQLYQELKSSPQPYLVPFLKRSLPALRKQTPNPQAFIQQCLQKPATPATALAAAS
GVAKPPNPGQVTQAVTVTSAAQQATPLQAKAQMVVQQAGVPGKTQVNLLQQTQRPPNHIT
MPAAQIHVKMVQAGAVTSVVKVPAVQASGSSSVLVRASTEEKLKKEGGGGGASFRDEDDI
NDVTSMAGVNISEENARILATNSKLVGAVIRSCKEETFLSSVPLQTKTLEIGKKHGVTEV
DSEVLSTISHATQEHLRELVEKITVIAQHRMMMYKGDDQYSLSSDARSQLRFFEQLDQLE
KQRKDEDERETMLRLAKSRSKHEDPEQLRLKQRAKEMKQLELAQLAQRDANLAALAAIGP
RKRKTPDSPSLGAGNEGLSGGGSALGVTRPRPFLRPRVTRVSLRDLLLCLEQERAARRSL
LLYRAYLK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccccgggctctcccggcgccgcgcctcctcccccggggcctccaccgcctcct
tccccggcggcaacgctgctcaacggcggggccgcagtcgcggtcgttcccgcccccgcc
cccgcccccgccgtcgcccgggcctcggtgcccgtcctacagagtctacaggtgccggcg
ggtatggtccttgtgcggagtgacagtgggcagctggtgctggtaccacagagggccttt
gctcaggctcaggcccaggccaaggctcgagcgcaagcacagagagctggcagcacctct
gccgctgcacccggtactacgcacactgtccgaatctccaacgtgcagacaattcgaacg
cagactgttgccaatcaaatgaagccactggctgcccagcagacaaaccaattgcaagct
ccgatccagacaaactctctaccacagcgcatcactctagtgcagtcgcagcctgtgact
ggagccattgcaacaaaatccccgtcaatagtagcggcaaaacaatcaacgcctgtaaat
catttggctgccgtgcgagttgtacaaaccagtgctgcaccggaaacgttggaaaatgtg
aagaaatgcaagaactttcttgcaacgttaattaaacttgcttccagtgggtcccagtca
atggagatgtccaacaatgtgaaacttttggtgcagcaactactggatgggaagttggaa
gcggaggaattcacaagccagctgtaccaagagctcaagtcttccccacagccttacctt
gtgccttttctcaagcgaagtttacctgccttacggaagcagacgccaaacccgcaggcc
ttcattcagcagtgcctacaaaaacctgccactccagctactgcacttgcggctgcctct
ggagtagccaagccgcctaacccagggcaggtcacacaggcggtcacagtgactagtgct
gcacagcaggcaacgcctctgcaggccaaggcacagatggtagttcagcaggctggagta
cctggcaaaacccaagtaaacctcctgcaacagacacaaagacctccgaaccacatcacc
atgcctgcagcgcaaatccatgtcaaaatggtccaagcaggtgctgtgacttcagtggtg
aaagtaccagccgtacaagcaagtgggagctcaagcgttctcgtgcgtgcctcgactgag
gaaaaattgaaaaaggaaggaggaggaggaggtgcatctttcagggatgaggacgacatc
aatgatgtaacctcaatggctggggtcaacatcagtgaagagaatgcacgcatccttgca
acaaattcgaagttggtgggtgctgtaatccggtcatgtaaagaagaaacattcctgtcc
tctgtgcccctacagacaaaaactttagaaataggtaagaaacatggtgtgacggaggtg
gactctgaagtgttgagcaccatatctcatgcaacgcaagagcacttgcgagaactcgtg
gaaaagatcactgtgattgcacagcaccgtatgatgatgtacaagggcgatgaccagtac
agcttatcaagtgacgcgcggtcacagctgaggttttttgagcagttggatcaacttgaa
aagcagcggaaggatgaggacgagagggaaacgatgctgcgactggctaaaagtcgatcc
aagcatgaagatccagaacaacttcgactgaagcaacgagccaaagagatgaaacaactg
gaacttgcacaactggcgcagcgggatgcaaatctagcggctctggcggccatcggaccg
aggaagagaaaaactcctgattcaccgagtctgggagcaggaaacgagggattaagcgga
ggcgggagcgcacttggtgtcacacggcctcgacccttcctgcggcccagagtaacacgc
gtcagtctcagggatctgctgctgtgcctagagcaagaacgagcggccaggcgctccctt
ctcctgtaccgagcctatctcaaatga
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