Leucoraja erinaceus (little skate): 129696474
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Entry
129696474 CDS
T09122
Symbol
vcpip1
Name
(RefSeq) deubiquitinating protein VCPIP1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
leri01002
]
129696474 (vcpip1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
leri04121
]
129696474 (vcpip1)
Enzymes [BR:
leri01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
129696474 (vcpip1)
Peptidases and inhibitors [BR:
leri01002
]
Cysteine peptidases
Family C64
129696474 (vcpip1)
Ubiquitin system [BR:
leri04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
129696474 (vcpip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
ubiquitin
Motif
Other DBs
NCBI-GeneID:
129696474
NCBI-ProteinID:
XP_055490374
LinkDB
All DBs
Position
4:complement(60775869..60809811)
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AA seq
1203 aa
AA seq
DB search
MLQGSKKKDRRILSGTCPDPKCQARLFFPAYGVSIECTECGQRHEQRNLLKVEEVTDPDV
VLHNLLRNALLGVTAPKKGTEMVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLGEMNQ
GEMFDCALLGDRAFLIDPEHIGTMGYGKDRSGSLLYLHDTLEEIKKANSNQECLIPVHVD
GDGHCLVHAVSRALVGRELFWHALRENLKQHFKLNLDRYKALFHDFIDAAEWEDIINECD
PLFIPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSCGDYSATFLPGLVPEEKCQG
KDGQLNKPICIAWSSLGRNHYIPLVGIKRGPLPMLPLKLLPKAWGVPQELIRKYILFEDD
SCTLGGDRSLQDKYLQRLVTAMEEIFLKKHDIHPSLVADVHQYIYRRTGVIGIQPEDVTE
AAKKAVTENRLQKCLICGALSELHVPTEWLVPGGKLYNLAASTHGQLKPDKNYSFPVNHL
VCSYDPKDDVLVPDYNLSHLTSCNWCHGTSMRHVKGDGSVVYIDGDRTNSRSAGGKCGCG
YKHYWEEKEYDNLPEAFPITLEWSGRVVRETVYWFQYESEVALNSNVYDVAMKLVTKHFP
GEFGSEILIQKVVSRILHHTAKKNPDEYTPVTVEGAHSQRVGDMQDEPTTEPHMPTKIIL
MGQKSKTLHKEELNMSKTERSIQQNIIDNAALSQKRKTDKLRQELKGPGQPSVPGIVKDG
SSSAPVTPTKSPFSPVPTKEKKIRVTTSDGRQATLTLQVSVTFSEFQESIAKEFKLPLHL
QCIRYGFPPKELHRPKVGFENEALPLQHGDRVSVEIMKDNKESVPACSTSVACSWKAEED
EASGQASVKDVQDHIDLEMSSLCLLATLMGEDVWSYAKKLPYLFEEGGVFYNAMKKDVGL
ANGKHFTLPHLPGKTFVYNGTDNRLELCIDPAGHIPIGPDIDNMIKEALSQLRSEGGPRS
REGSPSSHGGMKLGSGGVVRKKSEQMPNVTAFQGKGHSLGTASSSPQLEQRHSREMQMHR
KQSTGTSSATDLNCAIGKSSAKQEASPPKSSGGDSQLIRMAPGFVTMRDGRQLDPNLVEA
QRKKLQEMVSSIQASMDKHLRDQSAEESIPSDIHETKMQYTTSSVPLVTRTEGPQTDAPQ
QEPGTPQVGDNENLGMETTTGVELLSYSSIPSCKVQDSTLLNEDLEEMDSQEIEGTVEPM
DHS
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaggggtctaagaaaaaagacagacgtattctatcgggtacgtgtccggatcct
aaatgccaggctcggctgtttttcccagcctatggagtcagtatagaatgcaccgaatgc
ggccaacgccatgaacaaagaaatctgctcaaggtagaggaagtcaccgaccctgacgtg
gtgctgcataacctgctaaggaatgctctgctgggagtcacggcccccaaaaagggcacg
gaaatggtgaaagtaatggggttgtccaactaccattgtaagctgctgtctcctatcctc
acccggtatggcatggataagcaaactgggaaggccaagctcctcggagagatgaaccaa
ggggaaatgtttgattgtgccttgttgggtgacagggctttccttattgatccagagcac
attggaactatgggctatggtaaagatcgctcagggagtttgttatacctccatgatacc
ctagaagaaatcaagaaggccaatagtaatcaagaatgtttaattcctgttcatgttgat
ggtgatggccattgtttagttcacgctgtgtctagggccttggtgggtagagagcttttt
tggcatgccctgcgtgaaaatctcaaacagcactttaaattaaacctggatcgttacaaa
gcattgttccatgacttcattgatgcagcagaatgggaggatataattaacgaatgtgat
cctttgtttataccacctgaaggagttcctttgggtctacgtaacatccatatatttggt
ttagcaaatgtattacaccgcccaattattttattagattccctgagtggaatgagaagt
tgtggagattattcggctacttttcttccaggattagttcctgaagaaaaatgtcaggga
aaggatggacagcttaataaacctatttgtattgcatggagcagtttaggacgcaaccat
tatatacctttggttggaattaaaaggggtcctttacctatgcttcctttgaaactattg
cctaaagcctggggtgttccacaagagcttattcgaaagtacattctgtttgaagatgac
agttgtacattaggaggcgaccgaagtttgcaagataagtacttgcagagattagttact
gcaatggaagaaattttcttgaagaaacatgacatccacccttcactggtagcagatgtt
catcagtatatatacagaaggacaggggtaattggaatacaacctgaagatgtaactgaa
gctgcaaagaaagctgtaactgaaaatcgtttgcagaaatgtttgatttgcggtgctctt
tcagaacttcacgtgcctacagaatggttggttccaggcggaaagctatacaatttagct
gcaagcacgcatggtcaactgaagccagacaaaaattacagctttcctgttaaccatctt
gtatgttcctatgacccaaaagatgatgtattggtcccagattataatttgagtcactta
acatcttgcaactggtgtcatggtacatcgatgcgccatgttaaaggagatggttcggtt
gtgtatatagatggagatcgaactaactctagatctgctggaggcaaatgtggttgtggt
tacaagcattactgggaagaaaaggaatacgataacttacctgaagcatttccaataact
ttggaatggagtggaagggtggtgcgagaaactgtgtattggtttcagtatgaaagtgaa
gtggctctaaacagcaatgtttatgatgttgctatgaagcttgtcaccaaacattttcca
ggtgaatttggaagtgaaattttgattcagaaagttgttagcagaatattacatcataca
gccaaaaagaatcccgatgaatatacacctgtcacagtcgaaggtgcacatagtcagaga
gttggagacatgcaagatgaaccaaccacagaaccacatatgcctaccaaaattatttta
atgggtcagaaatcaaagactctgcacaaagaagaattgaacatgagtaaaactgaacga
agtattcagcagaatattattgacaatgcagcactttcgcaaaagcggaaaaccgacaaa
ttgcgccaggaactgaaaggaccaggccagccatctgttcctggaattgtgaaagatggt
tcatcatctgccccagttactcccactaagtcccctttctccccagtacctacaaaggag
aaaaaaattagagtaaccactagtgatgggagacaggcaacactaactcttcaagtatca
gtaactttttctgaatttcaagaaagtatagcaaaagaatttaagcttcctctacatttg
caatgcatacggtatggctttcctccaaaggaactgcatcgtcccaaggtgggatttgag
aacgaggctttgcccctacaacatggtgatcgtgtatctgtggagatcatgaaggacaac
aaggaatctgtgcctgcttgttcaacatcagtggcttgttcctggaaagctgaagaagat
gaagcatctggtcaagcatctgttaaggatgtgcaagaccatattgatcttgaaatgtca
tccctctgtcttcttgcaactttaatgggggaggatgtttggtcgtatgcaaaaaagcta
ccatacttatttgaagaaggtggagtgttctataatgcaatgaagaaagatgtgggtttg
gcaaatggcaagcacttcacacttccacaccttcctggtaaaacatttgtgtataatggg
acagacaatagactggagctgtgcattgatccagcaggacatatccctattggcccggac
attgacaatatgatcaaagaggcattaagtcagttacgatctgagggaggaccaagaagt
agagagggaagtccttcctcgcatggagggatgaaacttggaagtggaggagtagtgcga
aaaaagtctgaacaaatgccaaatgtcacagctttccaaggaaaaggccattccctaggg
actgcttcaagtagcccacagttggagcagaggcatagcagggaaatgcagatgcataga
aaacaaagtacaggcacttcctcagcaacagaccttaattgtgctattggaaagtcaagt
gctaagcaagaggcttccccaccaaaatccagtggtggagatagtcagctaatacgaatg
gcgcctggttttgtaacaatgcgtgatggtaggcaacttgatcccaatttagttgaagca
caacgtaagaagttacaggagatggtatcttctattcaagcttccatggataaacacttg
agggatcagagtgcagaagaatcaattcctagtgatattcatgaaacaaagatgcaatac
acaacttcctctgtcccattagtaacaagaactgaaggtcctcaaacggatgccccgcag
caagaaccaggcactccacaagtaggtgataatgaaaatttaggtatggaaacaacaact
ggtgtggaactcttatcttattcatctataccatcatgcaaggtacaagattcaaccctt
ttgaatgaagaccttgaagaaatggatagtcaggaaatagaaggaaccgtagaacccatg
gatcattcttga
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