Leucoraja erinaceus (little skate): 129696637
Help
Entry
129696637 CDS
T09122
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
leri00535
]
129696637 (col14a1a)
Proteoglycans [BR:
leri00535
]
Extracellular matrix (ECM) proteoglycans
Others
129696637 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_Dep-1_2nd
NDNF
VWA_3
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
129696637
NCBI-ProteinID:
XP_055490681
LinkDB
All DBs
Position
4:84306253..84511053
Genome browser
AA seq
1917 aa
AA seq
DB search
MQVFGHGIGTWLLVGFVAVTFDFISEAQAQVASPTRLKFSIMSQDSVKITWKPPRGRFHE
YRLTVTPVVGGKPQKLSIRKGETAVVVEGLLPNQEYMVQLFAINNKKESAPAQGRFTMRA
SRSRGRQGSPSQTKPKKVSDSQAGNTTTDEGSQFMCESPAIADIVVLVDGSWSIGRLNFR
LVRLFLENLVSAFNVDSDKTRIGLAQYSGDPRVEWNLNQHSTKEAVLDAVKNLPYKGGNT
LTGLALTFILENSFKPEAGSRAGVPKIGILITDGKSQDDVFSSAESLRDAGIELFAIGVK
NADVNELKAIASEPDETHVYNVADFNIMNTIIESLTKTVCTRVEEQDKGIKEASGRKSLE
PAAPSNLVVTDVTARSFRVSWSHAPGNVEKYRVVYYSTTAGQPEEVVVDGIESTAVLQNL
MSLTEYQIAVFAIYTKAASEALRGTATTLALPAAVDLDIYDVTHNSMRVKWEAAEAASEY
MILYAALTGGDTADEKEVKVDNSVTDIELERLSPNTEYTVTVYAMYGEEASDPLTGQETT
LPLTPPQNLQFSEITHSMGRVSWEAGSRKALGYRVMYVKTDTTAMGMVEVEDATPIFLTN
LTSLTEYTVAVLAIYDEGQSAPLTGSFTTRNVPQPLSLRISDVFEEEFRVSWNHAADDVT
LYRLACTPLSGEEAKEFVFSGATDTVVLDHLLPGMEYEVSLSAIYSDEAESEVITALETT
LQRIITTTPATTTTLRPTTVVIRSGIRNLVLDDETTFSLHVSWEPADAFITQYRVSYVSL
KGDRAEEGVSMVMVPGRQNDLLLQPLLSDTSYRITVTPIYADGEGSGRAVTGKTLALSGP
INLHVSEEWYNRFRIRWDAPPSPTMGYRVVYTSASAPGPTLDTFVGDDVNTMFILNLLSG
TEYIVKVFATYPTGSSEPLTGRAKTLYLGVTNLATEDVRMTSMCARWQFHRHATSYRVVI
ESLRDGKKEEVIVNGGTSRHCFYDLIPNTKHRISVYTQLQEMEGLAVNILEATVPVPTEP
PTPPPTTVPPPTIPPAREVCKTAKANLVFLVDGSWSIGDENFDKIIGFLYNTIGALYKIG
PDGTQVAIIQFSDDPRTEFQLNSYNDKEILLNAVERIRYKGGNTKTGRAIKHAKDSVFTV
EAGLQRGIPNVLVVITDGRSQDDVVKTSQEMQLEGFTIFAVGVADADYAELMNIANKPSN
RHAFFVDDFDAFKKIEDELVTFVCETASATCPLALIGDSSLAGFKMMEMFGLVEKEYASV
EGVSLESGSFNSFPCFRLHKNALVSQPTRNVHPEGLPSDYTVTFLFRLLSDTPQEPFALW
EVLNKQSEPLVGVILDNGRKALTYFNYDYKDEFQTVTFDDPEVKKIFYGSFHKVHVVITK
THARLVVDCKQVGEKSINAAGNISTTGLEVLGRMVRSRSPRDSSASFQLQGFDISCSTSY
ASRDKCCELPALRDEANCPALPHACTCSQDSKGPPGPLGPPGNAGLRGQRGVRGEQGPRG
PDGQRGVIGLPGPQGQPGPQGPSGQSIQGLPGSAGEKGEKGQSGPAGHQGLSGPRGLSGR
DGPPGQRGSVGKDGPSGLPGSPGPMGSPGVPGSPGAAGSPGSQGHIGPPGAQGLKGERGP
RGDVQSQSTVHDIAQQVCEQLIQSHLSRYNSILNSIPSNSVQVRAVPGPPGDTGRDGTAG
PAGEPGPQGRPGFPGTPGIPGRPGERGSPGEKGERGSTGFGKQGPRGTPGTPGPQGEGRS
GSQGPPGPPGRQGSLGRTGSSGPRGQPGPSGYCDPSSCAGYNVGGGYNDPTNQDIPVVQL
TPRSYQTYDPYDEQDPYVYHGPYPYPNPYSQPSYPEPHPVEPDHPFDGEEEESEEVEIRS
PGIRRFARSISKWRRTSSSKEEQMKECRQSVKSHMLYPYQMGNRNCAFSSEIKNWDL
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtctttggacatggcattgggacctggcttctagtgggatttgtagctgtgacg
tttgatttcatcagcgaggcacaagctcaagttgcctccccaacaagattaaagttttcc
ataatgtctcaggacagtgttaagattacatggaaacctcctagagggagatttcacgaa
tacagattaactgtgacaccagttgtaggtggtaaaccccagaaattaagcatacggaag
ggtgagacagctgtcgtggtggaaggtcttctccccaaccaggagtacatggtgcaactg
tttgcgatcaacaataaaaaagaaagtgcgccagctcaggggcggtttacaatgagggca
tcacgcagcagaggcaggcaaggatccccctcccaaactaaaccaaagaaagtatcggac
tctcaagccggcaataccacaactgatgaaggttctcagtttatgtgcgagtcgccagct
attgccgacatcgttgttcttgtggacggttcgtggagcatcggccgacttaatttccga
ctcgtgcgactgtttttggagaacttggttagtgctttcaatgtagattctgacaaaacc
agaataggactggctcagtacagtggagacccgagggtggaatggaatctgaaccaacac
agcacaaaggaggctgtattggacgctgtcaaaaatctgccttacaaaggcggcaacaca
cttacaggtctcgctttgacgttcatcctggagaacagttttaagcccgaggctgggtcg
agagctggtgtgccgaagattgggatcctgatcacggatggcaaatctcaggatgacgtc
ttctcatcggctgagagtttacgtgatgctggcatcgagctctttgctatcggcgtgaaa
aatgccgatgtaaatgagctgaaggctatcgcctccgaacctgacgagacacatgtttac
aacgtggctgacttcaatatcatgaacacgatcatcgaaagtctcaccaagacagtgtgc
acacgtgtggaagaacaggacaaagggattaaagaagcatcaggcaggaagagcctggag
ccagctgcaccctcgaaccttgtggtcaccgacgtcaccgcccgcagtttccgtgtcagc
tggtcacacgcaccagggaatgtggagaaataccgtgtggtctattactccaccaccgca
ggtcagccagaagaggtggttgtggacgggatagaatcaactgccgttctccagaatctg
atgtccttgacggaatatcagatcgcggtgtttgccatctacacaaaggctgccagtgaa
gcactccggggcaccgcaaccacactggccctgcctgctgccgtggacctggatatctat
gacgtgacccacaacagcatgagagtaaagtgggaggccgcagaagctgcctcggagtac
atgatcctttacgcagcgctcacagggggagacacagctgatgaaaaggaggtaaaggtg
gacaattcagttacggatatagaactggaaaggttgtccccgaacactgaatataccgtg
actgtgtacgccatgtatggggaggaagcgagtgaccccctgaccggacaagaaacaaca
ctaccacttacacctccccagaacctccagttctctgagatcacccacagcatgggcagg
gtcagctgggaagcaggatcaaggaaagctctgggctatcgtgtcatgtacgtgaagact
gataccactgcgatgggcatggttgaagtcgaagacgcaacaccgattttcttaacaaac
ctgacatcacttacggagtacacagttgcagtcttggcaatctatgatgaggggcaatca
gccccactgacaggcagcttcaccacaaggaatgttccgcagcctttgtccttaaggatc
agtgatgtttttgaggaagaattcagagttagctggaatcatgctgctgatgatgttacc
ttatacagactggcatgcactcccttgagtggtgaagaggcaaaggagtttgtgttcagc
ggggctacagacacggtggttcttgatcatttactgcctgggatggaatatgaggtgtct
ctatctgcaatttacagcgatgaggcagaaagtgaagttattacagcccttgaaactaca
cttcagcgaataatcacaacaactccagccaccacaacaactcttcgtccaactacagta
gtaatccgatctggaataaggaacctggtcttggatgatgagaccactttcagtctgcat
gtctcgtgggagcctgccgatgccttcatcacccagtacagagtgtcctatgtatctttg
aagggggatcgagcggaagaaggggtaagcatggtgatggttccagggaggcagaatgat
ctcctactccagcctctgctctcggacacgtcgtatcgaattaccgtgacaccgatctac
gccgacggagaagggagcggccgcgcagttactgggaagacgttggcgctctctggcccg
ataaacctgcacgtatcggaggaatggtacaaccgtttccggattagatgggacgcccca
ccatcaccgacaatgggctacagagtggtgtacacgtcggcctctgcccctgggccaact
ctggatacctttgtgggagatgacgtgaacacaatgtttattcttaacctactcagcgga
accgaatatatcgtcaaggtgtttgcaacctaccccacgggttctagcgagccgctgaca
ggaagagccaagacactgtatcttggtgtgacgaatcttgccacggaagatgttcggatg
acaagcatgtgcgctcgctggcagtttcatcgacacgccacctcctacagagtagttatc
gaatcactcagagatggaaagaaggaagaggtgattgttaatggagggacatctcgtcac
tgcttttatgatctcatcccaaacaccaagcacaggatcagtgtgtacacccagctgcag
gagatggaaggtttggctgtgaacatactcgaagcaactgttccagttccgacggagcca
ccaactcctcctccaacaaccgtcccgccgcccacaatcccaccggctcgggaggtttgc
aaaactgccaaagctaatctggtcttcctagtggatggatcgtggagtattggggatgag
aactttgacaagatcattggtttcttgtacaacaccattggagctctgtataagattgga
ccggatgggactcaggttgcaatcattcagttcagcgatgatcccagaacagaatttcaa
ctcaactcgtacaatgacaaggagattctcctcaacgctgtcgaacgcattaggtacaag
ggtggaaatacaaagacaggcagagccataaaacatgccaaggattctgtgttcacagtc
gaagcaggattacagagaggcattcccaatgtcctggtggtcattacagatggtcgatct
caagatgatgttgtcaagacttcccaagagatgcagttggaaggattcactatctttgcg
gttggtgttgctgatgccgattatgcagagctgatgaacattgccaacaagcccagcaac
aggcatgccttcttcgtggatgactttgatgccttcaagaagattgaggacgagcttgtt
acctttgtctgtgagacagcctctgcaacttgtccattggccctcattggagatagcagc
cttgcagggtttaaaatgatggagatgtttgggctggttgagaaggagtatgcttctgtc
gaaggagtgtcattggaatcgggctcattcaacagctttccgtgtttcagactgcacaag
aatgctctggtttcacaacccacaaggaatgtccatcccgaggggttgccatcggactac
actgtcaccttcctcttccgcctgctgtctgacactccgcaggaacccttcgccctttgg
gaggtcctcaacaagcagagcgagcccctggtcggggtcatcttggacaatggcaggaaa
gctctcacctactttaactacgattataaggatgagttccagaccgtcacctttgatgat
ccagaagtcaagaagatcttttatggaagctttcataaggtgcacgtggtaatcaccaaa
acccacgcaaggctggtggtggactgcaagcaagtgggggagaagtcaatcaatgcggca
ggaaacatcagcaccactgggttggaggtactgggccggatggtgcgctcccggagcccg
agggacagctcggcatcgttccaattgcaagggtttgacatttcctgttccacgtcctat
gcaagcagggacaagtgctgtgaacttcctgcactgagagatgaagccaattgcccagct
cttcctcatgcctgcacttgttcccaagacagcaaaggacctcctggacccctgggtccc
ccgggtaacgcaggtttacgaggccaaagaggtgtgagaggagaacaaggtccaagggga
cctgatggtcagaggggggtgatcggcctgccgggtccgcagggtcagcctgggccccag
ggaccgagcggacaatccattcaaggccttccggggagcgctggtgaaaagggtgagaaa
ggacagagtggccccgctggtcaccagggtctgtcgggtcctcgaggactctcgggacga
gatgggccaccaggtcaaaggggttctgtgggtaaagatggaccttcagggctaccaggc
tcacctgggccgatgggaagtccaggagtccctggttcccctggagctgcaggaagtccc
ggttcccagggccacatcggacctcccggtgctcagggtctgaaaggagagaggggcccg
aggggagacgtccagtcacagagtacagtccatgacattgctcagcaagtgtgtgagcag
ctcatccagagccacttatcaagatacaactccattctcaactccattcccagcaactcc
gtccaagtgcgggctgttccagggcctcccggagacactggccgtgacggaacagcaggt
ccagcaggagaacccggacctcagggccggccaggattccccggcacgccgggaatacca
ggtcgaccaggagaaagaggttcgccgggcgaaaaaggagagcggggatctactgggttt
ggtaaacagggcccaagaggaactccaggaactccaggccctcagggggagggccggagt
gggagccaaggaccaccaggtcccccagggcggcaaggcagcttgggacgtactggatcc
tctggaccaagaggacagcctggcccatcaggctactgcgacccttcttcatgtgctggc
tacaatgttggaggtggatacaatgatccaactaatcaagacatccccgtagtacaattg
actccacgctcctaccaaacttatgacccttacgatgagcaagatccgtacgtgtaccat
gggccctacccctacccaaacccatactcccagccctcctacccagagcctcatcctgtg
gaaccggatcatcctttcgatggagaggaggaggaatcagaagaggttgagatcaggtca
cctggaattagacgattcgcaaggagcatttctaaatggcgtcgcacatcttcaagcaaa
gaagaacaaatgaaggagtgtcgtcagagtgtaaaatctcacatgctttatccctatcaa
atgggcaatagaaattgtgcattcagctccgagattaaaaactgggacctctag
DBGET
integrated database retrieval system
