Leucoraja erinaceus (little skate): 129697144
Help
Entry
129697144 CDS
T09122
Name
(RefSeq) syndecan-1-like
KO
K06257
syndecan 1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04512
ECM-receptor interaction
leri04514
Cell adhesion molecule (CAM) interaction
leri04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129697144
04514 Cell adhesion molecule (CAM) interaction
129697144
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129697144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
leri04131
]
129697144
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
leri04090
]
129697144
00535 Proteoglycans [BR:
leri00535
]
129697144
Membrane trafficking [BR:
leri04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
129697144
CD molecules [BR:
leri04090
]
Proteins
129697144
Proteoglycans [BR:
leri00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
129697144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Serglycin
TM_ErbB1
FhbB
Motif
Other DBs
NCBI-GeneID:
129697144
NCBI-ProteinID:
XP_055491371
LinkDB
All DBs
Position
5:complement(39432573..39480405)
Genome browser
AA seq
348 aa
AA seq
DB search
MKMPNFSLAFLLAMVYPAVLLANRPQKLHRTLFSIDVEESDIYSEEGDDDDLYSGSGSGS
GSGSGSGSGSGGGFMLKQGSFIAKLTTDFPTAPSTSSSSPLSSSQVTVTDIPRQGVVKDL
STIPVLPDLHAVDTTTDAIMTSRMPSTTISKGTRANHFRPRIVDIKHDTTVAAPLMSSAG
PKVPSMLPDHTTAIVKDESFTVSHVVAEHENEKATTVNTNIDLINEVVVKMTVETVNSPI
EDDIFIKDETVIPNGRNPNPIQDHQSSVMPPKDSYVRDFSTSGSFLERRELLAAAVVGGL
VGLMIAVLLVVLLVYRMKKKDEGSYTLDEAKQPNGGYQKPKKQEEFYA
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgccaaatttcagcctcgcctttcttctggccatggtctaccccgccgtcctg
ttggccaacagaccacaaaagctgcaccgaaccttattttccattgacgtggaagagtct
gacatctattctgaagaaggtgatgatgatgatttgtactctggctctggctctggctct
ggctccgggtctgggtctggatctggttctggtggtggctttatgctgaaacaaggctct
ttcattgcaaagttgacaacagatttcccgactgctccttcaacatcttcaagcagtccg
ctttcttcaagccaagtaactgtgactgacatcccacgccaaggtgtcgtgaaagatttg
agcacaataccagtgcttcctgatttgcatgctgttgacaccactactgatgccataatg
accagccgtatgccttccaccaccatttcaaaaggaaccagagctaatcatttcaggcca
cgtattgttgacatcaagcacgacacaactgttgctgctcctcttatgagtagtgctggt
cctaaagttccaagcatgttacctgatcatacaactgctattgtcaaggatgaatccttc
actgtgtcacatgtggttgcagaacatgaaaatgaaaaagctacaacggtaaacacaaac
attgatctaattaacgaggttgtggtgaaaatgactgtggaaacagtaaacagtccaatt
gaagatgacattttcatcaaagatgaaacagtgattccaaatggtcggaacccaaacccc
attcaagatcaccaaagttcggtgatgccaccaaaagacagctacgtgcgagacttcagt
acatcgggcagttttctcgaaagacgtgaattattggcagctgctgtggttggaggactt
gtgggactcatgatcgctgtcctgctggtagtattgttggtatatcggatgaagaaaaag
gatgagggaagttatactttggatgaagcaaagcagccaaatggaggctaccaaaagcca
aaaaaacaggaggagttctacgcctaa
DBGET
integrated database retrieval system