KEGG   Leucoraja erinaceus (little skate): 129697187
Entry
129697187         CDS       T09122                                 
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
  KO
K10653  tripartite motif-containing protein 54
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:leri00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    129697187 (trim54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:leri04121]
    129697187 (trim54)
Ubiquitin system [BR:leri04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    129697187 (trim54)
SSDB
Motif
Pfam: zf-RING_UBOX zf-C3HC4_2 zf-C3HC4 RING_XB3-XBAT31 zf-B_box zf-RING_5 zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_6 Sina_RING Prok-RING_4 Zn_ribbon_FGT1_2 DUF6244 CYP38_PsbQ-like CDC37_M UvrD_C
Other DBs
NCBI-GeneID: 129697187
NCBI-ProteinID: XP_055491477
LinkDB
Position
5:complement(45928855..45972770)
AA seq 361 aa
MNLAVGFKPMLGDAQTMDSLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
FWQSRGTTTVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHTKP
DQQLKCEEHEDENINIYCLTCEVPTCSMCKVFGAHKDCEVAPLQNVYKRQKTELSDGIAM
LVAGNDRIQAIITQLEEICKTIEDNSRRQKQLLCEKFDALYAILEERKKEMLQSITRDQE
EKVQYVRSLMRQHGDHLEGASKLVETALQSMEEPQMAVFLQNTKQLIKKIIESSKAAQME
RAEPGYENMDHFVVNFGRAEQMLQRINFQSEYQGDEEEEIVEEEIEGGVIEEEAAIVPGQ
Y
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaaccttgcagtgggattcaaaccaatgctcggagatgcacagacaatggacagtttg
gagaaacaacttatttgtcctatttgcctggaaatgttcacaaaaccagtagtaatttta
ccatgccaacacaacttatgtagaaaatgtgccaatgatgttttccaggcttccaatcca
ttctggcagtcgaggggtaccacaacagtgccttcagggggtcgctttcgctgcccttct
tgccgacatgaggtagtgctggatcgccatggagtttacggcctgcagagaaatctcctg
gtggaaaatatcattgacatctacaagcaagaatcatccagacctctgcacaccaagcct
gaccagcagttaaagtgcgaagagcatgaagatgaaaatattaatatttactgtctaact
tgtgaggtaccaacctgctcaatgtgcaaagtctttggagctcacaaagattgtgaagtg
gcacctctgcaaaatgtgtacaaacgtcaaaagactgagcttagtgatggaatagcaatg
ctggtggcaggcaatgacagaatccaggcaattattactcagctggaagaaatctgtaaa
accattgaggacaacagcagaagacaaaaacaacttctttgcgaaaaatttgatgctctg
tacgctattctagaagagaggaaaaaagaaatgcttcaatctattactcgcgatcaggag
gagaaagtgcaatatgtccgatcattgatgaggcagcatggagatcacctagagggagcc
agcaaactggtagaaactgctttgcaatctatggaggaaccccagatggcagtgttcctg
cagaatacaaaacaactgattaaaaaaattattgaatcatcaaaagctgcacagatggag
agagcagaacctggatatgaaaatatggaccattttgtggtcaactttggaagggctgaa
cagatgttgcaaaggataaattttcaatcagagtaccaaggagatgaggaggaagagata
gttgaagaagaaatagaaggtggtgtgattgaagaggaagctgcaatagtgcctggtcaa
tactga

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