Leucoraja erinaceus (little skate): 129698056
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Entry
129698056 CDS
T09122
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129698056 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129698056 (pan3)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129698056 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
129698056 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Pkinase
Torus
PB1
Motif
Other DBs
NCBI-GeneID:
129698056
NCBI-ProteinID:
XP_055492868
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All DBs
Position
6:complement(46374987..46451231)
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AA seq
824 aa
AA seq
DB search
MNSGGGGGLQGVSCKAKYCRYYAKDKTCFYGDECQFLHEDPSNGAASASLGLVVNNNHPG
LGVGAAAPGVGGGGGGAAAAAAGGVASVSGCGGGVSGGGISSSSSSATAGGGVGFPHGGP
KKNELSSLVEPGQLLTIPGMDTTIPDNLTNSYFSSSFIGVNGFGGGPPEPKYPLIQRQAN
SSSSPSLLSDCAKAYACAGHDQLNLPASLFSDFSSLNISQRRKTPNPAASEFIPKGGSTP
RLNSVSQSNMSAFSPALFSHPSLGSPSAAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRR
SHTPNPANFMVATSASTPVSDAVSQSSSSGQVIQKETVGGTTYFYTDTTPGPLPGMVFPT
YIYPSSAPHVAYMQPKANAPSFFLSDELRQELIHKHLITMAQIDQTENPGFPTEVDSYHS
LFPLEPPPANRLQKTSNFGFITSCYKAINSKDDLPYCLRRIHGFRLINTKCMVLVDMWKK
IQHSNTVTLREVFTTKAFGEHSLVFAYDFHAGAETMMNRHFNDPSADAYFTKRKWGQHDG
PLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITGKTRLRVNCVGIS
DVLTFDSSQNNPLGMMPQYQQADLISLGKVVLALACNSVAGIQRENIQKAMDLVSLNYSS
DLKNLILYLLTDQNRLRSVNDIMPMIGARFYTQLDAAQMRNDVIENDLMKEVQNGRLFRL
LAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQLTEAGTPWIDLSHMVSCLNKLD
AGVPEKISLVSRDEKSVLVVTYADLKRCFESAFSELLAASNGQL
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcggcggcggtggcgggctgcaaggcgtgagctgcaaggcgaagtattgccgt
tactacgccaaggacaagacctgtttctacggcgacgagtgtcagttcctacacgaggat
cccagtaatggcgccgcttccgcgagcctcggtcttgtcgtcaataacaaccacccagga
ctgggagtcggggcggccgcgccgggggtcggcggcggaggaggaggagcagcagcagcg
gctgctggaggtgtcgcctccgttagcggttgtggagggggtgtaagcggtggcgggata
tcatcatcatcatcatcagcaacagcaggaggaggagtaggattcccgcacggagggccc
aagaaaaacgagctcagcagcttggtagagcctgggcagcttctcaccattccaggaatg
gatacaacaataccagataacctcaccaactcatacttcagcagcagctttattggggtc
aatggctttggaggagggccacctgagccaaagtaccctttgattcagaggcaagctaac
agcagcagttcacccagcctgttgagtgattgtgccaaagcctatgcctgtgcaggacat
gatcaactaaatttacctgcctcattgttcagtgatttctctagcctcaacatctcccaa
aggagaaagacaccaaatccagctgcaagtgaattcatcccaaaaggaggatcaacccca
aggctaaattctgtgtcccaatccaacatgtctgccttttcaccagccttattttctcat
ccatccttgggcagtccatcagcagctggcttagccccaggaatgtccttgtcagctgga
tcatcccctctgcactctccaaaaataactcctcacacatcgcctgcccctcgaagaagg
agccatactccaaatccagcaaatttcatggtagctactagtgcctctacaccagtgtct
gatgcagtctctcagtcttcatcttctggtcaggtgatacaaaaagaaactgtgggaggg
acaacttacttctatactgacacaactccaggacctcttccaggaatggtatttccaaca
tatatttatccttcatctgcaccccatgttgcttatatgcagcccaaagcaaatgcacct
tctttttttctgtccgatgaactcagacaggagttgatccacaagcatttaataactatg
gcacagattgaccaaactgaaaatccagggtttccaactgaagtggacagctaccacagt
ctttttcctttggaacccccaccagccaaccggctacaaaaaacgagtaattttggtttc
attacatcatgttacaaagctataaatagcaaagacgatctgccatattgccttcgcagg
atacatggctttcgacttattaacacgaaatgcatggtcttagtagacatgtggaagaag
atacaacattcaaacacagtaacacttagagaggtattcactaccaaagcatttggagaa
cactcacttgtatttgcttatgactttcatgctggagcagagacgatgatgaacaggcac
ttcaatgaccccagtgctgatgcctatttcacgaaaaggaaatgggggcagcatgatgga
cctctccctcgccaacatgcaggtttactgccagagtcactgatctgggcctacattgtc
cagttgagctcagcactgcggaccattcatacggcaggacttgcctgtcgtgtgatggat
ccaaccaagattcttataactggtaaaaccaggttacgtgtgaattgtgttgggatttct
gatgtcttaacttttgatagtagtcaaaataatccactgggaatgatgcctcagtatcag
caagccgatctaatatctcttggaaaagtggttttggccttagcatgcaactctgtggca
ggaatccagcgagagaatatacaaaaggctatggatttggtgtcgcttaattattcttca
gacctgaaaaacctgattttgtatttgttgactgatcaaaatcggctacgcagtgtaaat
gatattatgccaatgataggtgcacgattttacacacaattggatgctgcacagatgaga
aatgatgttatagaaaatgatttgatgaaggaggtacaaaatggaaggctgtttaggctg
ctagcaaaactgggaacaatcaatgaaaggccagaattccaaaaagatcctacctggtca
gaaacaggtgaccgatatcttctaaagctgtttagagatcatcttttccatcaattgact
gaagcaggtactccgtggattgatctcagtcacatggtctcctgtttgaacaagttggac
gctggtgtaccagaaaaaataagtcttgtttccagagatgaaaagagtgttcttgtggtg
acatatgctgatctgaagcgctgctttgaaagtgctttttcagaactccttgcggcttct
aatgggcaattgtag
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