Leucoraja erinaceus (little skate): 129698147
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Entry
129698147 CDS
T09122
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03013
Nucleocytoplasmic transport
leri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129698147 (upf3a)
03015 mRNA surveillance pathway
129698147 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129698147 (upf3a)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129698147 (upf3a)
mRNA cycle factors
P-body specific factors
129698147 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
129698147
NCBI-ProteinID:
XP_055493040
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All DBs
Position
6:54311805..54348743
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AA seq
498 aa
AA seq
DB search
MKEEKENKGRERRVEIQFREREEGEKRKEKDEKKEVLTKVVIRRLPPNLTKTQLEEQLHP
LPTHDYFEFCAADVSLYPHLFSRAYINFKNPDDIILFRDRFDGYIFIDNKGQEYPAVVEF
APFQKISKRKLKKKDTKSGSIEEDPEYKKFLESYCADEEKVAANPETLLGEIEAKTRELI
AGTDQFPTLENVYSQELKGVNRTWKQLHGYKNTARRTTPLLEYIKNKKLEKQRIREEKRE
ERRRRELEKKRLREEEKRKRREEERRKRKEAEKQKKIAEKERKEEIKIKLLKKADKEEEQ
DLDKWKEKAEDGEIDKGKWEKPCCPGKRSDNTQKDVKDKPPNDSDRERRERERERRLREK
ERERERQRRREDDRRKQKERYDVERAFRTKEDETKRGKEHGQEREKKGDSLNYMFSTEKI
DKLGKEDKNDDMGSKRERIRNKDRPAMQLYQPGARCRTRLGSGGRAYDCCSKSSEDSTER
KYEDDSSVGACSEKSCEE
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggagaaagagaacaaggggcgagagcgacgggtggagattcagttccgagag
cgggaggagggcgagaagcgcaaagagaaggatgagaaaaaagaagtgctcaccaaggtg
gtgattcgacgtttacctcctaacctaaccaaaacacaactagaagaacaattgcatcca
ctaccaacgcatgattattttgaattctgtgctgcagatgtaagcctttacccccaccta
ttctccagagcgtatatcaattttaaaaatcctgatgatataattctgttcagagaccga
tttgatggatatatcttcattgataataaaggccaggaatatccagctgtagttgaattt
gcaccatttcaaaaaatttctaaaaggaaactgaagaagaaagatacaaaatcggggagt
attgaagaagatcccgagtacaagaagtttttggaaagttactgtgcagatgaagaaaaa
gttgcagctaatccagagacgttactgggagagatagaggcaaagaccagagaactgatt
gcaggtacagaccaattcccaactctggagaatgtctatagccaggaacttaagggtgta
aacagaacttggaagcagctgcacgggtacaagaacacagccaggcgaaccacacctctt
ctggaatatattaagaacaagaagctggaaaagcagcgaattagagaggaaaaaagagaa
gaaagaaggagacgagagttggaaaaaaaacgtttgcgagaagaagaaaaaaggaaacgt
agagaggaagaaagacgtaaaagaaaagaagcagagaaacagaaaaaaatagcggaaaag
gaaagaaaggaagaaataaaaattaagttgttgaaaaaggctgataaggaagaagaacag
gacttggacaaatggaaagagaaagcagaggatggtgagattgataaaggaaagtgggaa
aaaccatgctgtccaggaaaacgatcagataatacacaaaaggatgtcaaagataaacca
ccaaacgatagtgatagggaacgcagggagagagagcgggaaagaagattgagggaaaaa
gaacgagaacgagagcgacaaaggcgacgtgaggatgaccgcagaaagcaaaaagagcgt
tatgatgtagaaagggctttcagaacaaaagaagacgaaacaaaaagagggaaggagcat
ggacaggaaagagaaaagaagggagacagcttgaactacatgttcagtactgaaaaaata
gacaaactgggtaaagaagacaaaaatgatgacatgggatctaaaagggaacggataagg
aataaggaccgcccagctatgcagttgtaccaacctggagcacggtgccgaacccgtttg
ggatctggtggaagagcatatgactgctgcagtaaatcctctgaagatagcacagaaaga
aagtatgaagatgacagttctgttggagcctgttccgagaagagttgtgaagaatga
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integrated database retrieval system
