Leucoraja erinacea (little skate): 129698314
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Entry
129698314 CDS
T09122
Name
(RefSeq) protocadherin-17-like isoform X1
KO
K16499
protocadherin delta 2
Organism
leri
Leucoraja erinacea (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129698314
Cell adhesion molecules [BR:
leri04515
]
Cadherins
Protocadherins
129698314
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
129698314
NCBI-ProteinID:
XP_055493370
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Position
6:complement(73806855..73942255)
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AA seq
1133 aa
AA seq
DB search
MYLQVLIFLLLWTGVLTLKNLKYTILEEQGPGTVIGNIAKDARLATSLEPRKPNFRVLEN
SAPHLLDVDRESGLLYTKQRIDRETVCKRVAKCVVSLEVFANDKELCMIKVEILDINDNA
PSFSTEQIDVEIPENAAPGTRIPLTSAHDPDTGQFGLQTYQLSSPSRLFGLEVKSRGDGT
KFPELIIQRPLDREQQPRHELLVTALDGGEPPKSSAVRLRVEVVDTNDNSPAFAEPSLSV
EVAENTPAGTFLIDVNATDPDQGTNGEVVYSFSPYASERIGQLFSIEPRSGVIRLRAALD
YEESSIYDIDVQARDLGPNSIPAHCKVSVRVLDVNDNAPTLSLVSMHQGPVSEAAPPGTM
LALVKATDRDSGRNGQLQCRVLGNGPFRLEENYDNFYTVLSERPFDREAADEYNLTIVAR
DNGSPPLNASRSFTVRVADENDNAPRFTKPVYVLQVPENNIPGEYLGSVLAHDPDLGPNG
SVAYSILPARVADVSVYTFVSVNPSKGAIYALRSFNYEQTKAFEFKVVAKDSGSPPLATN
CTVRVTVLDVNDNAPVIVLPALHNDTAEVQVPRNAGLGYLVATVRAVDSDHGDSGRLSYQ
IAEGNEQHLFDMDASSGELRTARSLWSQGAAAATELVVKVSDHGKPPLSAVARLVIAAYA
GAAPKDEQQRVPREQGHWDMSLPLIVTLSSISVILLTSMVTIAVKCRRENKEIRTYNCRI
AEYSHPHLGKGGKKKKLNKNDIMLVQSEVEERDVMNVVSSPSLASSPIYFDYQTRLPLSS
PRSEVMYLKPTSNKLTVPQGHGVCHTFSGQGSNPADVTSTRMSLIQTDNFPAEPNYMGSR
QQFVQSNSTFKDPERVSLRDSGHGDSDQADSDQDTNKGSCCDMSAKDALKIKSTTAKPPV
PEQEKEDCVNCTDECRVLGHSDKCWMPQFPVPNQAECSDYRRNVFVPAVEAAVESESQEN
TIPSGKKTFCTFGKDKREHTILVANVKPYLKAKRALSPLLQEVSSAASSPDKTSVAGSNK
SSKQSLSGFEVKPKMADTSAESSSQYLTSDGHFPSPDKRRDSHFITPEAVATVFADVHSR
VGREYSEVDTVLDQYESSTRDQGRDGVDAEQVVREIDKLLQDCRGSDPSTMRK
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgcaggttctgattttccttctactctggactggcgttctgaccttgaagaat
ttgaaatacacgatcttggaagagcaaggacccgggacggtgatcgggaacatcgcgaaa
gatgctcgcctggcgaccagtttggagccaaggaaacctaactttcgggttttggaaaat
tccgctccccatttgctagacgtggaccgggagagcgggttactttacaccaagcagcgc
atcgaccgggagaccgtctgcaaacgggttgccaagtgtgtggtgtcgctggaagtcttc
gccaacgacaaggagctgtgcatgatcaaagtggagatcctggacatcaatgacaatgcg
ccaagtttctccaccgagcagatcgatgtggagatccccgagaacgcggcgccggggacg
cggatacccctgaccagcgcacacgacccagacaccggccagttcggtctgcagacctac
cagctgagcagcccgagtcggctgttcggcttggaggtgaagtcgaggggagacggcacc
aagttccccgagctgatcatccagcggccgctcgaccgggagcagcagccgcgccatgag
ttgctggtgacggcgctggacggcggcgagccgcccaagtcgagcgcggttcgcctgcgg
gtcgaggtggtggacaccaacgacaacagcccggcgttcgccgagcccagcctgagtgtg
gaggtggcggagaacacgccggccggcaccttcctgatcgacgtgaacgccaccgacccg
gaccagggcaccaacggcgaggtggtctactccttcagcccgtacgccagcgagcgcatc
gggcagctcttctccatcgagccgcgctccggggtgatccgcctgcgcgccgccctcgac
tacgaggagagcagcatctacgacatcgacgtgcaggccagagacctggggcccaactcc
atccccgcccactgcaaggtgtcggtcagggtgctggacgtgaacgacaacgcgcccacc
ctcagcctggtgtccatgcaccagggcccggtgagtgaagcggctcctccgggcaccatg
ctggccctggtcaaagccaccgaccgcgactctggccgcaacgggcagctgcagtgccgg
gtgctgggcaacgggcccttcaggctggaggagaactacgacaacttctacaccgtgctg
agcgagcggcccttcgaccgggaggcggccgacgagtacaacctgaccatcgtggcccgc
gacaacggctcgccgccgctcaacgccagccgctcgttcacggtgcgcgtggccgacgag
aacgacaacgcgccgcgcttcaccaagcccgtgtacgtgctgcaagtgcccgagaacaac
atccccggcgagtacctgggctcggtgttggcccacgaccccgacctgggccccaacggc
agcgtggcctactccatcttgcccgcccgggtggccgacgtgtccgtctacaccttcgtc
tccgtcaacccgtccaagggcgccatctacgcgctgcgctccttcaactacgagcagacc
aaggctttcgagttcaaagtggtggccaaggactcgggctcgccgccgctcgccaccaac
tgcacggtgcgggtcacggtgctcgatgtcaacgacaacgcgcccgtcatcgtgttgccg
gcgctgcacaacgacacggccgaggtgcaggtgccgcgcaacgcgggcctcggctacctg
gtggccaccgtgcgggccgtggacagcgaccacggcgacagcggccgcctctcctaccag
atcgccgagggcaacgagcagcacctcttcgacatggacgcgagcagcggcgagctgcgc
accgccaggtcgctgtggtcgcagggggccgcggccgccaccgagctggtggtgaaggtg
tcggaccacggcaagccgccgctctcggccgtggcccgcctggtgatcgccgcgtacgcc
ggggccgctcccaaggacgagcagcaacgggtgccgcgggagcagggccactgggacatg
tcgctgcccctcatcgtcaccctcagctccatctcggtcatcctgctcacctccatggtc
accatcgccgtcaagtgcaggagggagaacaaggagatccggacttataactgcaggatc
gccgagtactcgcacccgcacctgggcaagggcggcaagaagaagaagctcaacaagaac
gacattatgttggtccagagcgaggtggaggagagggatgtcatgaacgtggtgagcagc
ccctccctggcctcttctcccatttatttcgattaccagacgcgcctgccgctcagctcc
ccccgctcagaagtcatgtacttgaagcccacctccaacaagctcaccgtcccccagggc
catggggtctgtcacactttctccggacagggctcaaatccggccgacgtaacctcaaca
agaatgtcactgattcagacagacaattttcccgcagagcccaattacatgggtagcagg
cagcagtttgttcaaagtaattccacatttaaagatccagagagggtgagtttgagggac
agtggacatggagacagcgaccaagctgacagcgaccaagacactaataaaggctcctgc
tgtgacatgtctgccaaagatgctctcaagataaaatctacgacagccaaacccccagtc
cctgaacaagagaaggaggactgtgtcaattgtacagatgaatgccgtgtcttgggtcat
tcagataagtgttggatgcctcagttccctgttccaaaccaagctgaatgttcagattat
cgtcggaatgtttttgtaccagcagtggaggccgcagttgaatctgaatctcaagaaaac
acaattccttctgggaaaaaaactttctgtacttttgggaaagacaagcgagagcacacc
attcttgttgcaaatgtaaaaccctatttaaaagcaaagcgtgctcttagtcctctcttg
caagaggtctcttcagctgcaagcagtccggacaagacttcagttgcaggtagcaacaaa
tcaagtaaacaatccctgagtggatttgaggtgaagccaaaaatggccgacacgtcagca
gagtcaagcagccaatacctaacatctgatggccacttcccatctcctgataaacgacgt
gacagccattttattacacctgaagcagtggctacagtctttgcagatgtgcactcaaga
gttggtcgagaatacagtgaggtagacactgtcttggatcagtatgaatcctcaacacgg
gaccaaggacgggatggagtggatgctgagcaggtagttcgagaaatcgacaagctttta
caagattgtcgaggaagtgacccttcaacgatgagaaaatga
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