Leucoraja erinaceus (little skate): 129698353
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Entry
129698353 CDS
T09122
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
129698353
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129698353
Cell adhesion molecules [BR:
leri04515
]
Cadherins
Cadherin related
129698353
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_CELSR2_9th
Ig_Cad99C_N
Fibulin_C
RET_CLD1
Cadherin_2
Cadherin_pro
He_PIG
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
129698353
NCBI-ProteinID:
XP_055493424
LinkDB
All DBs
Position
6:complement(82679095..82818988)
Genome browser
AA seq
3230 aa
AA seq
DB search
MDSMRKVAVEHRAVSQWLHVMMGFLVGWSVAGSSEPLVLHIDEEQPPYSIVGDINAGLPP
GHITSSFFTHETDGSGMSTDLIIDEMTGIIKTARVLDREARDKYRFVAVNLGGDTVEVVI
LVNDINDNAPVFPSSQMRLKISEQTPVGTRFRLDSAIDADRGQFSTQGYFIHSGNVGQSF
RLETKRLTETLDLELVVNSPLDREERSTYTLVVEAFDGGTPRKTSQMTLYVSILDVNDNA
PLFNQTRYHAIISESLQPGSRFLQVFAIDADEGNNAVVIYEINRRQSDPNQYFAIDSKTG
IIKLNKGLDYEMKKVHELVVQARDNATHPEITTAFVTVQVKDYNDNQPTLTIIFLSEDGS
PHISEGAQPGQFVARISVSDPDYGEYAKVNVSLDGGDGKFGLTTKDNIIYLICVDQMLDR
EEKDSYQLSVTATDSGTPPLRAESTFTIHVTDVNDNPPVFDHSRYKQSIPEVLYPGSFVL
QVTARDKDDGINGDIVYGIVNNPESHSEWFTIDQVTGVITTAATLDYETDPAPTLTVLAT
DRGHKPLSSSVTVTIAIQDVNDNEPVFSRNFYNTSIKENEPPGTCFLQISATDADSGSFG
TVTYSIGSGIGRLPPNQFTIDQHTGQICTSGALDRDEEPDHYEFTVTAVDGGGLNSMAYV
KVYVEDINDNRPVFYPLQYAASLSSQSRPGTVVLTVLAYDKDGGRNGKLTYRIVTGNKLA
LFTLNRGTGVISLASSLRSGGDSVQRLVISAQDTGGLTSLVNAVVNISIVSGSISPPIFE
QDQYFLTVAEDTRGGTPIGRVSALNSPGHSDSVFYTTISSGDPNGYFAVDLGTGVIRTKA
PLDHESDAVVTLDIQAHSGSPPAYSGTKVKITVSDINDNKPTFPTSSESILVPENTQLGS
VIYSASAEDKDSGANGQVQYDLVTGSQRTFSIDRTSGQLRLIGSLSYETAARYNLEMVAK
DSGAPQLSSTFTLLIHVQDESDTAPIFDTLTYRVEVKEGTPVNRRFLQVRALSQDTKGSH
VTYHLRPDEDSASFGIVSESGWLFVKSALDREDRDHFSLTVVASSVEGEHTKTGTAMVRI
SITDENDNTPTLSEDRYFFTAQENVPAAASTIGRVLATDRDQGLNSKLTYRLQPPHANFR
INPQTGEMSSVVTFDREVQASYQLTVEVQDGGAPPRSVTASVYVMVLDENDNSPVFTNVP
AGEELVLQIFEGNLSGNLVTTLQAKDADEGENGTVVFSLSGSWAQQFSLQPVTGELRSAT
ILRQRDRHEYELLVLAHDRGHPPQTTALTVRVQVLASPGKVPQLDSSSITFWSTEGTAPG
SVIGSVASGQRSSAADGEVTYTVVGGTDRDGRFLVDRLGGEVYVAQQLDYESGSHYQLEV
AVDSVRSGLPHRSIILLDINIQDSNEHPPLFPEDPITIVINENVPTGSSIYSFHALDQDG
SGPNSEVRYTLLTQSPPDPQLQLHPVTGVLAAADTIDRETTATLLLVVQATDQALNASQR
KSSAATVRVFVTDENDNSPQFLSPPTVSVLENQPAGSVIGHLVAQDADLGENGRVTYRIT
SGRGHSHFHLNPDTGALTTLDILDCEEQNQFNLTVEVSDHGVPSRKTSQSLQVQVIDVND
QIPTFDQTTYDVGVTENQSPGSPVLQLQAIDRDEGSNGLVTYGAVQDDSFSIDPVSGMIS
SRGALDRELQSIHLLTVYAQDGGIPPNVATATVCIRIEDENDNVPQFDKEVYQLQVPENQ
PRVILFTVKATDKDSGENGRVEYGIVGGDDHGHFSIDRDSGILSTTAGLDREATVLYTLT
IAAWDQGEPQHSSSVSVFIHVLDMNDNSPTFPEPSYMAEVGEDSVVGTLVLQVSAVDRDA
GSNGQVFYYLSSDSLGMFSVDTVGRVTTAQPLDREKEDIYTFLVRAVDSAPSDPRSSTTR
LEVIVKDVNDNSPHFLVDPLVVNISKHTPVHQVVATMKAEDKDFGANASIFYRFAKVVAG
FSINSFTGEIRLLSVLGPMTQRERTLLVVATDQGTPARSTTGVVNIHLREQPDLGIRFRR
SLADVAVAENTAPGTSVIRVQAQHPNGSNKGIMYSIFSGNERGTFTIRSHTGDISIKSAA
GLDFEEGARRRLVIMAETSSSAVFTSVTLVLQDINDNLPLFQQQNYVAFIWEAQGYSTPI
MQVLASDVDQGQNGQVTYSIAASPQSELFHINPLTGDISTAAIMDREIWPKTQLRLTATD
RGYPRLVGSATLTIVVLDLNDNSPTIPLPQEVRVSENAVIGREITKVTGNDVDSGPVLTY
TLLTETHVFSINRYHGLVSLAAALDFEQQSWYLLTVRTSDSKHSTEANITIHVEDVNDNP
PLFMQDLYQVLVSEFTPPGTSIVTVTATDRDSGANGQVHYRLLDPEDGLFNIDPHNGTLF
TVQPLVAGVSGSLSVLVEARDRGSPALSSRAKVWVQLLDVNDHSPVFGQREYRAEEPEDL
RPGSTVLSFEATDADWGPDNGGVDYTIVSGNTANAFQVQSGLRRGAGGRAWRTLGRLVLA
QRLDFETVAAYNLTIAASDRGVPRRSSTALALVTVRDVNDNPPVFARSRYEVTVSEAAAV
GGELARVWASDRDTGTALRYSISSGDAAGQFAVDERSGVVRLVRALDLELQQRHLLIVQA
RDGHEPGAHVALVPLAVRVTDVNDNRPLFPVPRLSASVRENLPAGTLVIALRATDRDRGA
FGKLRYSLVGRTEPSAAPPPLSLHPGTGELRTTRPLDLERRAAVQVVARALDAGNASATV
TVTVLVTGEDEYDPVFSQAAYSFAVPGDARRGHAIGRVHATDEDRGLDGAVVYSLLAPSR
HFAVNRSTGELLLRVDGAGPREVRATREPRTITLTIAARGPLADARSAQTEATVDVSLTS
IGLAPEVNPLLVAALAASLGVGAMLAVVGLALVIVRARRKRGLEAEAEALQDKARAAESS
LPPADRIYHQTLPGYTGAPTLVAGAYPRGDSVDPSHSSGRGSAEAAEDDEIRMINEFPRL
GSALPERVSARGPDSGIQRDADQMSDTSTEPASDWLKPGKAPCALTPAPGGALPGTGIRD
CAFPEDGRPAARGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLASVFTEIARLKDESAP
RKAATRPGADPRPCIDPPPLITAVAHPSAMSVPPRLAVGRGLGATLPRSPITSDTSIASA
AMSPSFSPSLSPLAARSPVVSPFDVSQAPPASLLSTDTSLDSPEEPELRI
NT seq
9693 nt
NT seq
+upstream
nt +downstream
nt
atggattcgatgcggaaagtagcagttgagcaccgagctgtttcccagtggcttcacgtg
atgatgggattcctagttggatggtccgtggcagggtccagtgagcctctggttcttcac
atcgatgaagaacaaccaccttacagtatcgtcggtgacataaatgcaggtcttcccccc
ggccacatcactagcagtttcttcacacacgagaccgatggctcgggcatgtccaccgac
ctcatcattgatgaaatgacgggaattattaagacagccagggtactggatcgtgaggcc
agggataagtaccgatttgttgcggtgaatttaggaggtgatacagttgaagtggtgata
ttagtcaatgatataaacgacaatgctcctgtctttcccagcagtcagatgcgactgaaa
atatcggagcagacacctgtgggaactcggtttcgcttggactcggctatcgatgccgat
agaggccagtttagcacgcagggatatttcatacacagtggaaatgtagggcagtccttt
aggctggaaactaaaagactgactgagacactggacttggagctggtggtcaacagtccc
ctggacagggaagagagatccacctacactctggtggttgaagcctttgatggtggaact
cctcgaaaaacaagtcagatgactttgtacgtctccattttggacgtcaatgacaatgct
ccactatttaatcagactcgataccatgctataatctcagagagtctacagcccggcagt
agatttctccaggtctttgccatagatgcagatgaaggaaataatgcagtggttatttat
gagatcaacaggaggcagagtgatcctaaccagtactttgccattgactccaagaccggt
atcatcaaattaaacaaaggattggattatgaaatgaagaaagttcatgagctggtggtc
caagctcgagacaatgctacacatcccgaaataacgacggcatttgttacagttcaggtc
aaggattataatgataaccagcccactctcaccatcatctttctcagtgaagatggttca
cctcacatatctgagggagctcaacctggtcaatttgtggccaggatctctgtatctgat
cctgattatggagaatatgccaaagtcaatgtatccttggatggtggtgatggtaaattt
ggactaactaccaaggataatattatttatttaatttgtgtggaccagatgttagacaga
gaggagaaagatagttatcagctgagtgttacagccactgattctggaacaccgcctctc
agagctgaatcaacctttaccattcatgtcactgatgttaatgacaacccaccagtcttt
gatcattcaaggtataagcaatccattccagaggttctataccctggaagctttgtgcta
caagtaacggccagagataaagacgacggcattaatggtgatattgtttatggaattgtc
aacaacccagagtctcactccgagtggttcaccattgatcaagtcactggagttatcacc
acagctgcaactttggactacgaaaccgaccccgctcccacattgaccgtgttggccact
gatcgtggacacaagcctctgtcttcctctgtgactgtcactatagcgatccaggatgtt
aacgataatgagcctgtgttcagcagaaatttctataatacttcaatcaaggaaaacgaa
ccccctggaacctgctttctccagatctcagccacagacgctgacagcggcagcttcgga
actgtcacctactccattggatctggcattgggcgcctaccacccaatcagttcaccatt
gaccagcacaccggtcaaatctgtaccagcggcgccttggaccgggacgaggaacccgac
cactacgagttcacggtgacggctgtggacgggggcggtctgaactccatggcctacgtg
aaggtttacgtggaggacatcaatgacaaccggcccgtgttctacccgctgcagtacgcg
gccagtctcagcagccagagccggccgggcaccgtggtgctcacagtccttgcctacgac
aaggatggcgggaggaacggcaaactgacgtatcgtatcgtcacaggaaacaagctcgcc
ctgttcaccctcaacaggggcaccggagtgatttcacttgcatcgtcgctgcgctctgga
ggagactcggtccagcgcttggtcatctctgcccaggacactggtggcctcacctctctg
gtcaacgctgtggtcaacatcagcatcgtgtctggctccatctcaccgcccatcttcgag
caggaccagtacttcctgacggtggctgaggacacgcgtggcggcactcccatcggccga
gtcagtgccctcaattccccaggtcattctgactccgtcttctataccaccatctcgtct
ggtgaccccaacggctactttgccgttgacctgggcacgggagtgattcggacaaaggcc
ccgctggatcacgagtctgatgcggttgtgacgttggacattcaggctcacagcggctcc
ccgccggcctatagcggcactaaggtcaagatcaccgtctctgacatcaatgacaacaag
ccaacgttcccaacctcctccgagtctatccttgtccctgagaacacgcagctcggatca
gtcatctactcggccagtgctgaggacaaggacagtggggccaacggtcaggttcagtac
gacctcgtgaccggatcacaacggaccttcagcattgaccgcacgtctgggcagctccgt
ctgattgggtctttgagctacgagaccgcagctcgctacaacttggagatggtggccaag
gacagcggagctcctcagctcagctcaaccttcaccctgctcattcacgtgcaggacgag
agtgacactgcccctatctttgacactttgacctacagggtagaggtcaaggaagggacc
ccggtcaaccggcgattcctccaggtgcgggctttaagccaggacacaaagggcagccac
gtcacgtaccacctgcggcccgatgaggactcggccagtttcggcatcgtttctgagagc
ggatggctgtttgtgaagagcgctctggaccgggaggacagagaccacttcagcctcacg
gtggtggcgtccagcgtcgagggggagcacaccaagaccgggaccgccatggtccgcatc
tccatcaccgacgagaacgacaacacgcccacactgagcgaggatcgctacttcttcacc
gcgcaggagaacgtgccggcggcggcgtccaccatcggccgtgtcctggcaactgaccgg
gatcagggtctgaacagcaaactgacctacaggctgcagcctccacacgccaacttccgt
atcaacccacagaccggtgagatgagctcggtggtgacctttgaccgagaggtccaggcc
agttaccagctgacggtggaggttcaggatggaggtgctccaccacgcagtgtcaccgcc
tctgtgtacgtgatggtcctggatgagaacgacaactctcccgtcttcaccaacgtgcca
gcgggggaggagctcgttctgcagatttttgaaggaaacttatctggaaatctagtgact
accctacaggccaaggatgcggacgagggggaaaacgggacagtggtcttctccctctca
ggatcctgggcccagcagttctctctccagccggtgactggtgaactgcgatcagccacc
attctgcggcagcgcgaccggcacgagtacgagttactggtcctggctcatgaccgtggg
caccctccacagaccaccgccctcaccgtgcgtgtccaggtgctggcctccccaggtaaa
gtgccacagctggacagcagttccatcaccttctggtccaccgagggaacggcccccggt
tcggtcatcgggtcagtggcctcgggccagcggtcatcagctgcggacggagaggtgacg
tacacggtggtggggggcacggatcgagacggccgcttcctggtggacaggctggggggg
gaggtgtatgtggcccaacaactggactatgagtctgggtcccactaccagctggaggtg
gccgtggacagtgtccgcagcggcctgccacaccgctccatcatcctgctggacatcaac
atccaggactccaacgagcacccacccctcttccccgaagaccccatcaccatcgtcatc
aatgagaacgtgccaaccggatcctccatctacagcttccatgccctggaccaggatggg
agtggtcccaacagtgaggtgcgttacaccttgctgacccaatctcccccagacccccag
ctccagctccaccccgtcactggggtgctggctgcggccgacaccattgaccgggagacc
actgccacgttgctgttggtggtgcaggctaccgaccaggccctcaacgccagccagcgc
aagtcatcggcggccactgtccgcgtctttgtgaccgacgagaacgacaacagcccccag
ttcctgtcgccgcccacggtcagcgtcctggagaaccagccggcgggatcggtcatcggt
catctggtcgctcaggacgccgacctgggagagaacggccgggtcacctaccgcatcacg
tccggtcgcggacactcacacttccacctcaacccagacacaggggcgctgaccaccctt
gacattctggattgtgaggagcagaaccagttcaatctcactgtggaggtgtctgatcac
ggagtgcccagccgcaaaaccagccagtctctgcaggtccaggtcatcgatgtcaacgac
cagatccccacctttgaccagacaacatacgacgtgggggtcacggagaaccagtccccg
ggcagtcctgttcttcagctgcaagcgatcgacagagatgaaggttccaacgggctggtc
acgtatggggccgtgcaggacgacagcttctccattgacccggtgtcggggatgatcagc
agcagaggtgccctggacagagagctgcagtccatccacctgctcacagtttacgctcaa
gacggtggaattccccctaacgttgccacggcgacagtttgcatcaggatcgaggatgag
aatgacaatgtgccgcagtttgacaaggaggtttatcaactccaggtcccagaaaaccag
cctcgggtgatcctgttcacagtcaaggccacggacaaagattccggtgaaaatggccgt
gtggaatatgggatcgttgggggtgatgaccatggccacttcagcatcgacagagacagt
gggatattgtccacaactgctggtctggacagggaggccactgtcctctacaccttgacc
atcgcagcgtgggatcagggtgagccacaacacagcagctcagtgtctgtctttatccac
gtgttggacatgaacgataactcacccacattcccggagcccagctacatggcggaggtg
ggagaggacagtgtggtgggcactctggtgttgcaggtgtctgctgtggacagggacgcg
gggtctaatgggcaggtgttctactacctgagcagcgactcgctgggcatgttcagtgtg
gacacggtgggcagagtgaccacagcccagcccctagaccgggagaaggaagacatctac
acgttcctggtgcgagcggtggactcggcaccctctgacccccgcagctccaccaccagg
ctagaggtcatcgtgaaggacgtcaacgacaactctccacacttccttgttgacccgctg
gtggtcaatatctccaaacacacacctgtccaccaggtagtggccaccatgaaggccgag
gacaaggactttggagccaacgcctccatcttttaccgctttgccaaggtggtggcgggc
ttcagcatcaactccttcaccggggagatccggctcttgtcggtgctcggccccatgacc
cagagggaacgcacgttgttggtggtggcgactgaccagggaacgcccgctcgctccacc
accggcgtggtcaacatacacctgcgggagcagccggacctcggcattcgcttccgccga
agcctcgccgacgttgcagtagccgagaacacggcaccaggcacgtctgtgatccgggtc
caagcccagcacccgaacggctccaacaaaggaatcatgtacagcatcttcagtgggaac
gagcgagggacattcaccatccgctcccacaccggcgacatctccattaagagcgcggct
ggactggactttgaggagggggcgcgccgacgcctggtcattatggctgaaacctcgtcg
tctgccgtcttcacctccgtcacgctggtcctccaggacatcaacgacaacctgcccctc
ttccagcagcagaactacgtggccttcatctgggaggcccagggttacagcacgcccatc
atgcaggtgttggccagtgacgtggaccagggtcagaatggtcaggtgacctactccatc
gctgcctctccccagagcgaactcttccacatcaacccgctgaccggagacatcagcact
gcggccatcatggacagggagatctggccaaagacacagctgcgtctgacggccactgac
cgtggatatccgcggctggtgggttcggccactctgaccatcgtcgtgctcgacctcaac
gacaacagccccactatccccctgccccaggaggtgcgagtctccgaaaacgcagtgatt
ggccgggagatcaccaaggtgacgggcaacgacgtggactcggggcccgtgttgacctac
acgctactgaccgagacccacgtcttcagcatcaatcgctaccacggcctggtctcgctg
gcagccgcactggactttgagcagcaatcctggtacctgctcaccgtccgcacatcagac
tccaagcacagcaccgaggccaacatcaccatacatgtagaggacgtcaatgacaaccct
ccactcttcatgcaggacctgtaccaggtgttggtgtcagagttcacgcccccggggaca
agcattgtcaccgtcacggccactgaccgggactctggagccaacggccaggtccactat
cgcctgttggaccccgaggacggtctgtttaacatcgacccccacaacgggaccctgttc
acggtgcagccgctggtggccggggtgtcgggctcgttgtccgtgttggtggaggcgcgg
gaccggggctctccggccctcagttcccgggccaaggtgtgggtgcagctgctggatgtg
aacgaccacagcccggtgttcgggcagcgcgagtaccgggccgaggaaccggaggacttg
cggccgggcagcacggtgctgagcttcgaggcgacagatgcggactggggcccggacaac
ggcggcgtggactacaccatcgtcagcggcaacaccgcaaatgccttccaggtgcagagc
ggactgcggcgcggcgctggcggccgtgcatggcggacactcggccgcctggtactagcc
cagcgcctggacttcgagacggtcgccgcctataacctgaccatcgccgcgtctgaccgc
ggggttccccggcgcagctccaccgccctggcgctcgtcaccgtccgcgacgtgaacgac
aacccgccagtgttcgcgcgctcccgctacgaggtgacggtgagcgaggcggcggccgtg
ggcggcgagttggcacgagtgtgggcgagtgaccgggacacgggcacggcgctgcgttac
tccatcagctcgggagacgcggccggacagttcgcggtggacgagcggagcggggtcgtg
cgcctggtgcgcgctcttgacctggagctgcagcagcggcatctgctgatcgtgcaggcc
cgtgacgggcacgagcccggcgcgcacgtcgccctggtgccgctggccgtgcgcgtgacc
gacgtcaacgacaaccggccgctcttcccggtgccgcgcctgagcgcgagcgtgcgcgag
aacctgccggcggggacactcgtgatcgcgctgcgcgccaccgaccgcgaccgcggcgcc
ttcgggaagctgcgttactcgctggtcgggcgcacggagccgagtgcagccccacctccc
ctgtcactacaccccggtaccggggagctccggaccactcggcccctcgacctggagagg
cgcgcggccgtgcaggtggtggcgcgcgcgctggacgccggcaacgcttcggccacggtg
acggtcacggtgctggtgacgggcgaggacgagtacgacccggtcttcagccaagccgcc
tactccttcgccgtgcccggggacgcgcgccgcggccacgctatcgggcgcgtgcacgcg
acggacgaggaccgggggctggacggcgccgtcgtctactcgctgctcgcgccgtcccgc
cacttcgccgtcaaccggagcaccggcgagttgctgctgcgcgtggacggcgcgggaccg
cgcgaagtgcgcgccacccgggagccgcggaccatcaccctgaccatcgcggcgcgtggc
ccgctggcggacgcgcgctcggcccagactgaggccacggtcgatgtgtcgctcacgtcc
atcgggctcgcccccgaggtgaacccgctgctcgtggccgcgcttgctgcgtcgctgggg
gtcggcgcgatgctggcggtggtcgggctcgcgctcgtcatcgtgcgcgcgcgtaggaag
cgcggcctcgaggcggaggcggaggcgctgcaggacaaggcgcgcgcggccgagagctcg
ctcccgcccgccgaccgcatctaccaccagacgctgcccgggtacacgggcgcgcccacg
ctggtggcaggcgcgtacccgcgcggggactcggtcgacccgtcgcactcgagcggccgc
ggctccgccgaagcagccgaggacgatgagatccgcatgatcaacgagttcccgcgcctg
ggaagcgcgctcccggagcgcgtgtccgcgcgcggccccgactcgggcatccagcgcgac
gccgaccagatgtcggacacgtccaccgagcccgcgtccgattggctgaagccgggcaag
gcaccgtgcgcgctcacgccagcccctggcggcgcgctcccgggcaccgggatccgggac
tgcgcgttcccggaggacgggcgtccggcggcgcgcggctcgctcacggccatcgtggcg
agtgacgaggagttgcggggcagctacaactgggactatttgttgaactggtgcccgcag
ttccagccactcgccagcgtcttcaccgagatcgcgcgtctcaaggacgagagcgcaccc
cgtaaagcggcgaccagaccgggcgcggacccacgaccttgcatcgaccccccgccactc
atcaccgccgtcgcccaccccagtgccatgtcggtgccgccgcgactggccgtcggccgc
gggctcggagccactctgccccgctcgcccatcaccagcgacacttccatcgcctcggcc
gccatgtcgcccagtttctccccgtccctgtcgccgctcgccgcacgatcgcccgtagtc
tcccccttcgacgtgtcccaggcgccgcccgcctccctcctcagcaccgacacctcgctc
gacagccccgaggaaccggagctccgcatctga
DBGET
integrated database retrieval system
