Leucoraja erinaceus (little skate): 129698862
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Entry
129698862 CDS
T09122
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129698862 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
leri03041
]
129698862 (dhx15)
03009 Ribosome biogenesis [BR:
leri03009
]
129698862 (dhx15)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129698862 (dhx15)
Spliceosome [BR:
leri03041
]
Complex A
U2 snRNP components
U2 related factors
129698862 (dhx15)
Complex B
129698862 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
129698862 (dhx15)
Ribosome biogenesis [BR:
leri03009
]
Eukaryotic type
90S particles
Helicases
129698862 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
Cas3-like_C_2
SRP54
Flavi_DEAD
AAA_25
AAA_29
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
129698862
NCBI-ProteinID:
XP_055494170
LinkDB
All DBs
Position
1:84156374..84274057
Genome browser
AA seq
775 aa
AA seq
DB search
MSKRHRVDLGDDYSTNKKRVTSDGRKDRDRDRDKDYERSKDRDRDRDRDRERDRDRDRER
DRDREKDARNLSNAALTTGGNMPLISTPALHQQAINPFTNLPHTPRYYEILKKRLQLPVW
DYKERFGDILAKHQSFVLVGETGSGKTTQIPQWCVDYVRAVVGPKRGVACTQPRRVAAMS
VAQRVADEMDVMLGQEVGYSIRFEDCSSAKTCLKYMTDGMLLREAMNDPLLERYGVIILD
EAHERTLATDILMGVLKEVVKQRSDLKIIIMSATLDAGKFQVYFDSCPLLTIPGRTHPVE
IFYTPEPERDYLESAIRTVIQIHMCEEEEGDVLLFLTGQEEIDEACKRIKREIDDLGPEV
GDIKIIPLYSTLPPQQQQRIFEPPPPKKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPG
FAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYP
EILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGS
MMAEFPLDPQLAKMVIASCEHNCSNEILSITAMLSVPQCFVRPTEAKKAADEAKMRFAHI
DGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTEF
TSRDYYINIRKALVSGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFV
LTTKNYIRTCTDIKPEWLVKIAPQYYEMGNFPQCEAKRQLERIIGKLQSKEYSQY
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcggcaccgcgtggacctgggggacgattactcgaccaacaagaagcgcgtc
acctcggacgggcgaaaagatagagaccgagaccgtgacaaagattatgaacgctcaaag
gaccgagatagggatcgtgatagagatcgggaacgcgatcgtgatagggatcgggaacgc
gatcgggatcgtgaaaaagatgcaaggaacttgtctaatgcagctttgacaacaggaggc
aatatgcctctcatttccacaccggcacttcaccaacaggctatcaatccattcaccaac
ttgccccacacgccacgctattatgagatcctgaaaaagagactgcagttgcctgtgtgg
gattacaaggaaaggttcggtgacatcttggccaaacatcaatcctttgtgcttgttggc
gagactggctctggaaaaacaacgcagattcctcagtggtgcgttgactacgtgcgagct
gtggttggacccaagcggggtgtggcctgtactcaacccaggagggtggctgccatgagt
gtagcccagcgagtggctgatgaaatggatgtgatgctgggccaggaggttggctactcc
atcagatttgaagactgcagcagtgcaaagacctgcctgaaatacatgactgatggtatg
ttgcttcgagaagcaatgaatgaccctttactggagcgatacggagtcatcatccttgat
gaggcccatgagcgtacattagcaaccgatattcttatgggtgtattaaaagaagttgtg
aagcagagatcagatttgaagattatcatcatgagtgccacacttgatgcaggcaagttt
caggtctactttgacagttgcccactgcttactattcctggtcgtacacatcctgtagaa
atattctatactccagaaccagagagggactatctggagtcagcgattcgaacagttatt
cagatacatatgtgtgaagaagaggagggagatgttcttctcttccttacgggtcaagag
gaaattgatgaagcttgtaaaaggataaaacgtgaaattgatgacctaggacctgaagtt
ggagacatcaagatcattccactttattccacacttccaccccaacaacaacaaaggata
tttgaacctccaccaccaaaaaaaccaagtggcgccataggaagaaaggttgttgtgtct
acaaatattgctgaaacctcactcactattgacggagttgtgtttgtaatcgatccaggc
tttgcgaaacagaaggtatataacccaaggattcgagttgaatcattattggtgactgcc
atcagcaaagcatctgcacagcaaagagctggccgtgctggtcgtaccagaccagggaag
tgcttcagactttacactgaaaaggcctacaaaactgaaatgcaggacaatacataccct
gaaattttgagatccaatctgggttctgtagttcttcaactgaagaaacttggcattgat
gacttggtacattttgacttcatggatccaccagcgcctgagacactgatgagggcattg
gaacttttgaattatttggctgcactgaatgatgatggcgacttgacggaacttgggtcc
atgatggcagaattcccattagatccacagttggccaagatggtcatagccagttgtgag
cacaactgttcaaatgagattctctccatcaccgcaatgttgtcagtcccacagtgtttt
gttcgcccaacggaagctaagaaagcagctgacgaagccaagatgaggttcgcacatata
gatggagatcacctgaccctgctcaacgtttaccatgcattcaagcagaatcatgagtcg
gttcagtggtgctatgacaactttattaactacagatccttgatgtctgctgacaatgta
cgccagcagctgtcacgaatcatggacagattcaacctgcctcggaggagtacggaattc
acaagtcgagattattacataaacattagaaaggcactggtttctggctacttcatgcag
gtggcgcacttggaacgtacaggccattatttgacagtgaaagataaccaggttgtgcag
cttcatccttctacagtcctggaccataaacctgagtgggtgctctacaatgaatttgta
ctcaccactaaaaactatatccggacctgtacagatatcaaacctgaatggttagtgaag
atagctcctcaatactacgaaatgggcaactttcctcagtgtgaagccaaaagacaactg
gaacgcattattggcaaacttcagtcaaaggaatattctcaatattga
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