KEGG   Leucoraja erinaceus (little skate): 129699330
Entry
129699330         CDS       T09122                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    129699330 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:leri03021]
    129699330 (taf5l)
   03036 Chromosome and associated proteins [BR:leri03036]
    129699330 (taf5l)
Transcription machinery [BR:leri03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     129699330 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     129699330 (taf5l)
Chromosome and associated proteins [BR:leri03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     129699330 (taf5l)
    STAGA complex
     129699330 (taf5l)
    TFTC complex
     129699330 (taf5l)
    SAGA complex
     129699330 (taf5l)
    SLIK complex
     129699330 (taf5l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP DSE1_N CFAP251_N Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_Aladin NBCH_WD40 Beta-prop_WDR41 WDR90_beta-prop_4th PAC11 Beta-prop_SPT8 Beta-prop_NOL10_N Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_DCAF4 ASA1 Beta-prop_VPS8 Beta-prop_WDR19_1st WD40_RFWD3 Tricorn_2nd Beta-prop_HPS5 Beta-prop_Vps41 PEP5_VPS11_N PROPPIN TRM82_WD WD_LRWD1 WDR54 PD40 BCAS3_WD40 Beta-prop_DCAF12 DUF7165
Other DBs
NCBI-GeneID: 129699330
NCBI-ProteinID: XP_055494978
LinkDB
Position
8:complement(13413239..13429021)
AA seq 587 aa
MKRVRAEQIQGAVGHYLRRRQFVESDGAMKQGPKFTQTAEEMATNLTVQAESGSPNVVSA
APCQADPNQYEIQFSRLKVFLFDTESKYSREVKQLLYPLFVYLHLDMVHSGLKSAADSFY
SRFHGMFLQNIDQKDIMEQLRSTLNSQDIYSNSKLRTLIENKYVVSFTEESYNYLLRYLQ
SDNNSTLCKVLASHIHLDVQCSQQTGYQLYSVGAQSRSDVVGLEPSEIPTTILQNEAALE
MLQDSIKQVKDGPPSLTTICFYAFYNTDQLLNTAEISPDNKLLSAGFDNSCIKLWSLRSK
KLKFGPQQVDVSRINLACDIVDNEVVDDVGSEMKILRGHCGPVYATKFLSDNSGLLSCSE
DMTVRYWDLCSFKNTGLYQGHAYPVWDIDVSPLSLYFVSGSHDRTARLWALERTYPLRIY
AGHLADVDCVKFHPNSNYVATGSIDKTVRLWSTQQGNTVRLFTGHRGPVLALAFSPNGKY
LASAGEDQRLKLWDLASGNLFKELRGHTDNITSLAFSPDSSLIVSASVDNSVRVWDIRNT
HSNSLADGSSNELVGVYTGQTSNLLSVQFMTCNLVLVTGVAQEKKEP
NT seq 1764 nt   +upstreamnt  +downstreamnt
atgaagcgagtacgcgcagaacagattcaaggtgctgttggtcactacctcagaagaagg
caatttgtggagtcggatggagccatgaagcaaggaccgaagtttacacagactgctgaa
gaaatggcaaccaacttaacagttcaggcagagtctggatctcccaacgtggtgtctgca
gctccctgtcaagctgatcctaatcaatatgagatacagttttcgaggcttaaagtcttc
ctttttgacacagaatcaaagtacagccgagaagtgaaacaactgctctaccctttattt
gtctacctccatcttgacatggtacacagtggtttgaagagtgcagcggacagcttctac
agtcgcttccatggaatgttcctacaaaacatagatcaaaaggacattatggaacagctg
cggagtactctgaacagccaggatatttattcaaactctaagctgcgtactctgatcgaa
aacaagtatgttgttagctttactgaagaaagttacaactatctcctccgctacctccag
agtgacaataatagtactctatgcaaggttctagcctcgcatattcacttggatgtgcag
tgttctcagcagactggctatcagctttacagtgtcggagcccaatcgcgaagtgatgta
gtgggcttggagccgtcagagattcccaccaccattttgcagaatgaagcggcactagag
atgttgcaggacagtataaaacaagtaaaggatgggccgccctctctcacaacaatttgt
ttttacgctttctacaacacggaccaattgctcaatactgcggaaatttcacccgacaat
aaactgctcagtgccggctttgacaattcttgtataaaactctggagtttgcggtcgaag
aaacttaaatttgggccacagcaggtggatgtttctcgaatcaaccttgcctgtgatatc
gtggataatgaggtggtagatgatgtgggcagcgaaatgaagatcctaagagggcactgt
gggcctgtgtacgccaccaagtttctctcggataattcaggacttctctcctgttcggaa
gacatgacagtccgatattgggatttgtgcagttttaaaaacactggtttgtatcaaggt
catgcttatccggtctgggacattgatgttagtcccctgagcctttactttgtgagtgga
tcgcatgaccggacagcaagactttgggcacttgaaagaacgtacccactacgcatttac
gcaggtcacttagcagatgtggactgtgtaaagtttcatccaaactctaattatgtggcc
acgggctcgatagataaaactgtgcggctgtggagtactcagcaagggaacacagttcgt
ctcttcacgggacatcgtggccccgtgctagcattggccttttctccgaacggcaagtac
ttggcttcagcaggtgaagatcagcgactgaaactctgggatcttgcatcgggtaattta
ttcaaagagctgagaggacacaccgacaacataactagccttgcgtttagtccagatagc
agcctgattgtctctgcgtccgttgacaattctgtccgtgtctgggatattcgtaacact
cactccaattcactggcggatggttcttccaatgagctggtgggtgtatacacaggacag
accagcaatcttttgagtgttcagttcatgacctgtaatctggtgttggttacaggggtt
gcacaagagaaaaaagaaccataa

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