Leucoraja erinaceus (little skate): 129699330
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Entry
129699330 CDS
T09122
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129699330 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129699330 (taf5l)
03036 Chromosome and associated proteins [BR:
leri03036
]
129699330 (taf5l)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129699330 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
129699330 (taf5l)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
129699330 (taf5l)
STAGA complex
129699330 (taf5l)
TFTC complex
129699330 (taf5l)
SAGA complex
129699330 (taf5l)
SLIK complex
129699330 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_Vps41
PEP5_VPS11_N
PROPPIN
WD_LRWD1
WDR54
Beta-prop_DCAF12
Mala_s_1-like
DUF7165
Motif
Other DBs
NCBI-GeneID:
129699330
NCBI-ProteinID:
XP_055494978
LinkDB
All DBs
Position
8:complement(13413239..13429021)
Genome browser
AA seq
587 aa
AA seq
DB search
MKRVRAEQIQGAVGHYLRRRQFVESDGAMKQGPKFTQTAEEMATNLTVQAESGSPNVVSA
APCQADPNQYEIQFSRLKVFLFDTESKYSREVKQLLYPLFVYLHLDMVHSGLKSAADSFY
SRFHGMFLQNIDQKDIMEQLRSTLNSQDIYSNSKLRTLIENKYVVSFTEESYNYLLRYLQ
SDNNSTLCKVLASHIHLDVQCSQQTGYQLYSVGAQSRSDVVGLEPSEIPTTILQNEAALE
MLQDSIKQVKDGPPSLTTICFYAFYNTDQLLNTAEISPDNKLLSAGFDNSCIKLWSLRSK
KLKFGPQQVDVSRINLACDIVDNEVVDDVGSEMKILRGHCGPVYATKFLSDNSGLLSCSE
DMTVRYWDLCSFKNTGLYQGHAYPVWDIDVSPLSLYFVSGSHDRTARLWALERTYPLRIY
AGHLADVDCVKFHPNSNYVATGSIDKTVRLWSTQQGNTVRLFTGHRGPVLALAFSPNGKY
LASAGEDQRLKLWDLASGNLFKELRGHTDNITSLAFSPDSSLIVSASVDNSVRVWDIRNT
HSNSLADGSSNELVGVYTGQTSNLLSVQFMTCNLVLVTGVAQEKKEP
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagtacgcgcagaacagattcaaggtgctgttggtcactacctcagaagaagg
caatttgtggagtcggatggagccatgaagcaaggaccgaagtttacacagactgctgaa
gaaatggcaaccaacttaacagttcaggcagagtctggatctcccaacgtggtgtctgca
gctccctgtcaagctgatcctaatcaatatgagatacagttttcgaggcttaaagtcttc
ctttttgacacagaatcaaagtacagccgagaagtgaaacaactgctctaccctttattt
gtctacctccatcttgacatggtacacagtggtttgaagagtgcagcggacagcttctac
agtcgcttccatggaatgttcctacaaaacatagatcaaaaggacattatggaacagctg
cggagtactctgaacagccaggatatttattcaaactctaagctgcgtactctgatcgaa
aacaagtatgttgttagctttactgaagaaagttacaactatctcctccgctacctccag
agtgacaataatagtactctatgcaaggttctagcctcgcatattcacttggatgtgcag
tgttctcagcagactggctatcagctttacagtgtcggagcccaatcgcgaagtgatgta
gtgggcttggagccgtcagagattcccaccaccattttgcagaatgaagcggcactagag
atgttgcaggacagtataaaacaagtaaaggatgggccgccctctctcacaacaatttgt
ttttacgctttctacaacacggaccaattgctcaatactgcggaaatttcacccgacaat
aaactgctcagtgccggctttgacaattcttgtataaaactctggagtttgcggtcgaag
aaacttaaatttgggccacagcaggtggatgtttctcgaatcaaccttgcctgtgatatc
gtggataatgaggtggtagatgatgtgggcagcgaaatgaagatcctaagagggcactgt
gggcctgtgtacgccaccaagtttctctcggataattcaggacttctctcctgttcggaa
gacatgacagtccgatattgggatttgtgcagttttaaaaacactggtttgtatcaaggt
catgcttatccggtctgggacattgatgttagtcccctgagcctttactttgtgagtgga
tcgcatgaccggacagcaagactttgggcacttgaaagaacgtacccactacgcatttac
gcaggtcacttagcagatgtggactgtgtaaagtttcatccaaactctaattatgtggcc
acgggctcgatagataaaactgtgcggctgtggagtactcagcaagggaacacagttcgt
ctcttcacgggacatcgtggccccgtgctagcattggccttttctccgaacggcaagtac
ttggcttcagcaggtgaagatcagcgactgaaactctgggatcttgcatcgggtaattta
ttcaaagagctgagaggacacaccgacaacataactagccttgcgtttagtccagatagc
agcctgattgtctctgcgtccgttgacaattctgtccgtgtctgggatattcgtaacact
cactccaattcactggcggatggttcttccaatgagctggtgggtgtatacacaggacag
accagcaatcttttgagtgttcagttcatgacctgtaatctggtgttggttacaggggtt
gcacaagagaaaaaagaaccataa
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