Leucoraja erinaceus (little skate): 129699494
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Entry
129699494 CDS
T09122
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03013
Nucleocytoplasmic transport
leri03015
mRNA surveillance pathway
leri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129699494 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
129699494 (eif4a3)
03015 mRNA surveillance pathway
129699494 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129699494 (eif4a3)
03041 Spliceosome [BR:
leri03041
]
129699494 (eif4a3)
03009 Ribosome biogenesis [BR:
leri03009
]
129699494 (eif4a3)
03012 Translation factors [BR:
leri03012
]
129699494 (eif4a3)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129699494 (eif4a3)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129699494 (eif4a3)
mRNA cycle factors
Stress granule specific factors
129699494 (eif4a3)
Spliceosome [BR:
leri03041
]
Complex C
Other components
EJC/TREX
129699494 (eif4a3)
Ribosome biogenesis [BR:
leri03009
]
Eukaryotic type
90S particles
Helicases
129699494 (eif4a3)
Translation factors [BR:
leri03012
]
Eukaryotic type
Initiation factors
eIF-4
129699494 (eif4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
129699494
NCBI-ProteinID:
XP_055495307
LinkDB
All DBs
Position
8:32149899..32315721
Genome browser
AA seq
412 aa
AA seq
DB search
MGVRGWWRAMAGVGRKRVLKEEDISKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFE
KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELA
GQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR
AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVILISATLPHEILEMTNKFMTDPIRI
LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE
ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRE
LYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcgaggctggtggagagcgatggcgggcgtggggaggaagcgcgtcctgaag
gaggaggacatctccaaggtggagttcgagaccagcgaggaggtggacgtcacccccacc
ttcgacaccatggggttgcgggaagacctgctgcggggcatctacgcctacggctttgag
aagccatcggctattcagcaaagggccattaagcaaataattaaaggaagagatgtcatt
gctcaatcccagtccggaacagggaagacagcaactttctgtgtgtcagtgttacaatgc
ctggacattcaggttcgtgagacccaggctctcatactggcgccaacacgggagctggca
gggcagatacagaaggtgctgctcgccctcggtgactacatgaacgtacagtgccacgct
tgtatcggagggaccaacgttggagaagatatccggaagttggactacgggcagcatgta
gttgctgggactccgggccgtgtattcgatatgatacggagacggagtttgaggactcgt
gccatcaaaatgttggttctggatgaagcagatgagatgctgaacaaaggttttaaggag
cagatctatgacgtgtacaggtacttgccgccggccacacaggtgattctcatcagcgcc
acccttccccacgagatcctggaaatgaccaacaagttcatgaccgaccccatccgaatc
ttggtcaaacgtgatgagttgaccttggaaggaatcaaacagttctttgtggcagttgaa
agggaggagtggaaatttgataccctgtgcgatctttacgacacgctgaccattacccag
gctgtcatcttctgcaacaccaagcggaaggtcgactggctgactgagaaaatgcgagag
gccaacttcacggtgtcctccatgcacggcgacatgccgcagaaggaaagggagtccatc
atgaaggagttccgctctggtgccagccgggtgctcatttccacagacgtctgggccaga
gggttggacgttccccaggtgtcgctgatcataaactacgacctacccaacaacagagag
ctctacatccacaggatcggccgatctggtcgttacggccgcaaaggcgtggccatcaac
tttgtgaagaacgacgacatccgtattctgcgggatattgaacagtactactccacacag
atcgatgagatgcccatgaacgttgctgatcttatataa
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