Leucoraja erinaceus (little skate): 129699633
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Entry
129699633 CDS
T09122
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129699633 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leri03400
]
129699633 (msh2)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129699633 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
HSBP1
Motif
Other DBs
NCBI-GeneID:
129699633
NCBI-ProteinID:
XP_055495579
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All DBs
Position
8:complement(44159499..44211645)
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AA seq
936 aa
AA seq
DB search
MAVQPRDRLSGADGGQDSGAFVAFYRSMPEQPATTFRVFDRSDYYTVHGKDALFAAKEVF
KTNGVIKHLGSGSNKLESVVLSKMNFESVVRDLLLVRQYRVEVYRNKAASKCSKENDWHL
ACKASPGNLTQFEEILFGTNDMSTAAGVVGVRLGTADGQRLVGVGYIDSILRKLGVCEFP
DNDQFSNLEALLVQIGPKECVLSGGETPGDGTKLRQIVQRGGILITDRKKSEFTNKDIVQ
DLNRLLKGKKGEHVSSAALPEMEKQVAMSSVSAVIKYLELLSDSTNFGQFELITFDLNQY
MRLDNAAVSALNLFQGSSEDASNTQSLAGLLNKCKTSQGQRLVNQWIKQPMMDKNRIEER
LNLVEAFVEDTELRQNLQEDLLRRFPDLNRLAKKFQRHAAVLQDCYRIYQAVNHLPNVVQ
VLDRYQGAHQMLLKAVFISPLTDLITDFAKFQELIETTLDLNQVENHEYLVKPSFDPNLT
ELREKMDDLEKSMQSALNQAARELGLEAGKTVKLESNAQLGYYFRVTCKEEKALRNNKKF
NTIDIQKNGVRFTNGKLSSYNEEYVKNRGEYEEAQNAIVKEIINISAGYVEPQQTLNDVI
AQLDAVVSFAHVANGAPVPYVRPVILEKGQGRIVLKASRHPCIEVQDDVAFIPNDVTFEK
DKQMFQIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCDSAEISIVDCILARVGAGDSQL
KGVSTFMAEMLETAAILRSATEHSLIIIDELGRGTSTYDGFGLAWAISEYISTKICAFCM
FATHFHELTALADQVPTVNNLHVTALTTDETLTMLYRVKKGVCDQSFGIHVAELAQFPRH
VILSAKDKALELEEFQNTGSTEDFDDEPMAKKSRQEKQDGERIIADFLSSIKALPISDMS
EEEVKQRLVMLKSKVLAQNNSFVNEMIAKSKVMALK
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgcgcgaccggctgagcggcgcggacggcggacaggatagcggcgcc
tttgtggccttttacagatctatgcccgagcaacctgccaccacattccgcgtcttcgac
cgcagcgactattacacggtgcacgggaaagacgcgctgttcgccgccaaagaagttttc
aaaaccaacggtgtcatcaagcacctgggctcaggaagcaataagctggaaagtgtggtg
ctgagcaaaatgaactttgaatctgtggtcagggatcttctgttagtccggcaataccgt
gtggaggtttatagaaacaaagctgccagtaaatgctcaaaggagaatgattggcacttg
gcctgtaaggcttctccaggtaatctcacacagtttgaagagattctttttggcaccaat
gatatgtctactgcagctggtgtagttggcgttagactgggcactgcagatgggcagagg
ttagtcggtgttggctacatcgactccatactccggaagcttggtgtgtgcgagttcccg
gacaatgatcagttttctaatctggaagccctgctggtgcagattgggcccaaggaatgt
gtgctttcaggtggtgagactccaggagacggcacaaaactcagacagatagtgcagcga
ggaggcattttgattacagataggaagaagagcgagtttacaaataaagacatagtgcaa
gacctgaaccggctactgaaaggaaagaaaggagaacatgtgtcaagtgcagctctgcca
gagatggaaaaacaagttgccatgtcttctgtatccgctgtgatcaagtatttggagctc
ttgtcggatagcactaactttggtcaatttgagctgatcacctttgatctgaaccagtac
atgaggttggacaatgcagcagtcagcgcactcaatcttttccagggctcatctgaagat
gcaagcaatacccagtcactagctggtttattgaataagtgcaagacttctcagggacaa
cgccttgtcaaccagtggatcaaacagcctatgatggacaagaacaggattgaggagaga
cttaacctggtggaggcattcgtggaagacacggagcttcggcagaatttacaggaggat
cttcttcggcgctttcctgacctcaatcgcctggcgaagaagttccagcgtcatgcggct
gtcctgcaggattgctaccggatttaccaggctgtcaaccacctcccaaacgtggtgcag
gtgttggataggtaccaaggagcacaccagatgttactaaaagctgtctttatctcccca
ttgactgacctcatcaccgattttgccaagtttcaggagttgattgagaccacattggat
ctgaatcaggtggaaaatcacgagtatctggtaaaaccatcatttgacccaaatctaact
gaacttagagaaaagatggatgacctggagaaaagcatgcagtcagctctcaaccaagct
gccagagagttaggtcttgaagctggaaagactgtgaaactggagtcaaacgctcagttg
ggttattacttccgcgtcacctgcaaggaggaaaaggctcttcgcaacaataagaaattt
aatactatagatatccagaagaatggagtccggttcacaaatggtaagctgagctcctac
aatgaggaatacgtgaagaacagaggagaatatgaagaagcgcagaatgcaattgttaaa
gaaatcattaatatctctgcagggtatgtggaacctcaacagactctaaatgatgtgatt
gcacaactggatgcagtggtcagctttgcccatgtagctaatggagcccctgtgccatat
gtgaggccggtaatccttgaaaaaggtcaaggtcggattgtcttgaaggcttccaggcat
ccatgtattgaggtccaagatgatgtggccttcatacccaatgatgttacatttgaaaaa
gataaacagatgttccagataataacaggtcccaatatgggtggtaaatcaacatatatc
cgacagactggtgtggtggttctgatggcccagattggttgttttgtaccctgtgactct
gcggagataagtattgttgactgcatccttgctcgggttggcgctggtgacagtcaactc
aaaggggtttcaacattcatggcggaaatgttggaaactgcagctatcttgagatcagca
actgaacactcactgatcattattgatgaattgggaagaggaacctctacctatgatggc
tttggcctggcctgggccatatcagaatatatttccaccaagatttgtgcattttgtatg
tttgccactcatttccatgagttgactgccctggctgatcaagtaccaacagtgaataac
ttgcatgtgactgccctcaccacagatgaaacactaaccatgttataccgtgtgaagaaa
ggtgtttgtgatcagagttttggaattcatgtggcggagcttgctcagtttcccagacat
gtcattcttagtgccaaagacaaagccctggagcttgaggagttccagaacacagggagt
accgaagattttgatgatgagccaatggccaagaaatctcgtcaagaaaagcaggatggt
gaaagaatcattgctgattttctgtcaagcatcaaagctttgcccatttctgacatgtct
gaggaagaggtaaaacagaggttggtgatgctgaaatctaaggtgctggcacagaataac
agtttcgtcaatgagatgattgcaaagtccaaggtcatggctttaaagtaa
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