Leucoraja erinaceus (little skate): 129699846
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Entry
129699846 CDS
T09122
Symbol
arid1b
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129699846 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
leri03000
]
129699846 (arid1b)
03021 Transcription machinery [BR:
leri03021
]
129699846 (arid1b)
03036 Chromosome and associated proteins [BR:
leri03036
]
129699846 (arid1b)
Transcription factors [BR:
leri03000
]
Eukaryotic type
Helix-turn-helix
ARID
129699846 (arid1b)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129699846 (arid1b)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
129699846 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
129699846
NCBI-ProteinID:
XP_055495955
LinkDB
All DBs
Position
8:complement(71985601..72443345)
Genome browser
AA seq
1838 aa
AA seq
DB search
MRGYGFSDYSNPGASQASLKGSDMGSQYGVGSSQAWGGGGGGGGGGATTGQARSHPAMSP
GSTAQALGRTQGNPVDQMGMKRPQLYGMNNNPYSQQQQQQSGSYPAQPYGPPTPQRYPMT
MQSRNQSNMGGMQYPQQQMPPHYSQQSMSGYCQQGQQPYYNQQQQQQQQSSYMQQAQQRY
QAQQDITQEGYGTRTAPPLTSSKPNHEDLNLLQQERPSSLPDLSGSIDDLPTGTEGTLSS
GVSASGSSSGQGEQSNPAQSPFSPHASPHLSGIRGPSPSPVGSPVGSNQSRSGTLSPAGV
PGNQMPAQPSNSQPDASSHPAMNQSPMLQDRGFMPSVQRNAQVSQYGSQQTGAPMSPHPS
PVGQMHSAMGPYQQPNSSSPYGPQSAQFGPQGNYPRPPNYGGVPNTNYSGPGPGLTNNMS
MNMNNQMHGQGPAPPCSNMTVGRMSSSGMSNWPYSGNTSNMTPNSPGMSQQVGVGMGPPM
AAVNRKAQEAAAAVMQAAANSAQNRQTGYTGMNQSGMMGSSSPYSQPMNNTSLIMNSQTT
TYNMASNMVNSSSVSMNLGADMMTQGDSKLQVLQKMDIKEEGFPITETKSKKSNSSTTGE
KITKLYELGSEQERKMWIDRYLSFMEERGTPVASLPAVGKKPLDLYRLYICVKEIGGLAQ
VNKNKKWRELATALSVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEIFSSAESKKQ
PKIQPPSPAGSGSLQGPQTPQSTNSPMGESGDLKPPTPVSTPHGHMTPMQGNRNNAISVQ
DPFSDVSDPAFQKWGSMTPNTPYQPGMNMPEMMNRMSYEPNKDPFGGMRKVPGCNDPFMP
PGVMPNSGMQDLYNRSPSGAMGNMSMGQRQQYAYGSGYDRRSEHGMGPEGSMGPPGGQSN
MIPSNSDPSMYSPNRYPAQQRHDLYGQQYPGQGPPSGQTPYGAHQTGMYPQQQVQSYKRP
MEGMYGPPPKRHESDMYNVQYGSQQQEMYNQYGNAYTGPDRRSMQSQYPLTYNRDRMQGP
GPMQQHGMPPQMMGGPMQVSSTEGPQQGMWQSRNDMPYQYPNRQGPGGPPQASPYAGMNR
TEEMMLPDQRMNHEGQWPSHMNQRQPSYLPSASMVPITRPAQSSYQTPPSMPNHISRAPS
PAPFQRSLENRMSPNKSPYMSSMKMQKVGPPVQASQVAVPHHHPPSVRHEITFPPGSVEA
SQPLLKARRKLTSKDTGAPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQ
LSGFLELLVEYFRRCLIEIFGILKEYEVGDPGQKALLDPDIFKKDDAKDIKDDIMEEGEG
EEMDEACGDGDNVREENDLSESEDGEVSRAASDLQLGGEKPKQASKFDRLPLKIVKKDLC
VVDRTSKLGRVQEFDSGLLHWKIGGGDTTEHIQTHFESKMEILARKRVSGCLSSPAIEKK
TKEHENKENTSTEEQPGKSIAATIDDVLSARRGVLPEDHSNGSASESENNKFLFGIHEAK
KLRNIKLLEDEPCSHDNAPLCTVSDWRDSLAKRCICVSNIVRSLSFVPGNDIEMSKHSGL
ILILGKLILLHHEHPERKRTPRTYEKEEEEDEGVTCSKDEWWWDCLEVLRENTLVTLANI
SGQLDLSIYPESICLPILDGLLHWMVCPSAEAQDPFPTVGLNSVLSPQRLVLETLCKLSI
QDNNVDLILATPPFNRQEKLYATLVRYVGDRRISVCREMSVALLSNFARGDTLVARAIAV
QKGSISNLISFLEDGITVAQLQHSQPNLMHMQPPPVEPTSAHMMCRAAKALLAMARVEEN
RSEFVLQEGRLLDISISSVLNTMVASVICDTLFIIGQL
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atgaggggatacggcttctcggactacagcaaccccggcgcctcgcaggcctctctcaaa
gggagcgacatgggctctcagtacggagtaggcagcagccaagcctggggtggtggtggt
ggtggtggtggtggcggagcgacaactggacaagcccgcagccatccggctatgagcccc
ggtagcacggctcaggctctgggcaggacgcaggggaatccagttgatcagatgggcatg
aagagaccccagctgtatgggatgaataacaatccttattcacagcagcaacagcagcag
agtggctcttatcctgcccaaccatatggaccacccactccgcagcgctatccaatgacc
atgcagagcaggaatcaaagtaacatgggaggaatgcaatatccacagcaacagatgccc
ccacattatagtcagcagagcatgagtggttactgtcagcagggccagcaaccgtactac
aatcaacaacagcaacaacagcaacagtcatcatacatgcagcaggcacaacagaggtac
caagcccagcaggatataactcaggaaggctacggaacccggactgcgccaccattgaca
tctagcaagccaaaccatgaagatttgaacttgttacagcaagagagaccatcaagttta
cctgatttgtctggatccattgatgacctaccaacggggacggaaggaactttaagttct
ggcgtgagtgcttcaggatcctccagtggccaaggagaacagagtaatcctgctcagtct
cccttctcgccccatgcctcccctcacctctctggcatacgggggccctctccctctccc
gttggctcccctgttggaagtaaccagtccaggtctgggaccttgtccccagcaggtgta
ccaggaaatcagatgcctgctcaaccttccaatagtcaacccgacgcaagctcacatccg
gccatgaaccagtctccaatgttgcaggatagaggtttcatgccaagtgtccagagaaat
gcacaagtctctcaatacggatcccagcaaacaggtgctcccatgtcaccacatccatca
cctgttggacagatgcacagtgccatggggccttatcagcagcccaattccagcagccct
tatggtccccaaagcgcccaatttgggcctcaaggtaattatcccagaccgcctaattat
ggtggagtaccgaacaccaactacagtggtccaggtccaggcttgactaacaacatgagt
atgaatatgaacaaccagatgcatggtcagggcccagctccaccttgcagtaacatgaca
gtgggcaggatgtcatcatcggggatgtcgaactggccttactctggcaacacgagtaat
atgaccccaaactctccaggcatgtcacagcaggttggcgtggggatgggacctccaatg
gcagctgtaaatcgcaaggcacaggaggctgctgctgctgtgatgcaggctgcagcaaac
tctgctcaaaacaggcaaacgggatacactggcatgaaccaaagcggaatgatgggctct
agctctccctacagccagccgatgaacaacacctctttaataatgaattcgcagaccact
acttacaacatggcatctaatatggtgaacagctcctcagtttcaatgaatctcggagca
gacatgatgactcagggcgattccaaactgcaggtacttcagaaaatggatatcaaagaa
gaaggcttccctataaccgagaccaagtctaagaaatcaaactcttctacaaccggtgag
aaaataaccaagctgtacgaacttggtagcgaacaggagcgtaaaatgtggatagaccgt
tatttatccttcatggaggagagagggactccagtggccagtttacctgccgtgggcaag
aagcctttagatctttatcgactttacatttgtgttaaagaaattggcggtctggcacag
gttaacaaaaacaaaaaatggcgtgaactggcaacagccctgagcgtgggtacatcaagc
agtgcagcaagctcccttaaaaagcagtacattcaatacctgtttgcctttgaatgtaag
attgaacgtggagaggagccccctcctgaaatatttagttctgctgaatctaaaaagcag
cctaaaatacaacccccttctcctgcaggttcaggttccttacaaggaccacagacacct
cagtccacaaacagcccgatgggcgaaagtggggatttgaaaccaccaacacctgtatca
acgcctcatggacacatgacgcccatgcaagggaacaggaataatgcaatcagcgtgcag
gatcccttctcggatgttagtgacccagcatttcagaaatggggctccatgacaccgaat
acaccataccaaccaggcatgaatatgcctgaaatgatgaatcgaatgtcatatgaaccc
aataaggatccctttggtggtatgaggaaagtgcctggatgtaatgacccttttatgcct
cctggagtaatgcctaacagtgggatgcaggatctgtacaaccgttcaccatcaggagca
atgggcaacatgagtatgggccagcgacaacagtatgcttatggatctggctacgacagg
aggtctgaacatggaatgggtcctgaaggcagtatgggacctccaggtggtcagtctaac
atgatcccttccaacagtgacccaagtatgtactcgccaaaccgctaccctgcacaacaa
aggcatgatctttatgggcaacaatacccaggccaaggacccccttcaggacaaacacca
tatggagcacatcaaactggaatgtaccctcagcagcaggtgcagagttacaaacggccc
atggagggcatgtatggtcccccaccaaagcgccatgaaagtgacatgtacaatgtacaa
tatggtagccagcagcaggaaatgtacaatcaatatggcaatgcttatacgggacctgac
aggagatccatgcaaagtcagtacccattgacgtataatagagacagaatgcagggtcca
ggtccgatgcaacagcatgggatgccaccacaaatgatgggcggaccgatgcaagtgtcg
tccactgaagggccacagcaggggatgtggcaatcaaggaacgatatgccttatcaatat
ccaaaccggcaaggccctggagggcctccacaggcatcgccatacgcagggatgaaccgc
actgaagaaatgatgttacctgatcagagaatgaatcacgaaggtcaatggccttcgcat
atgaaccaacggcagccttcatacttgccttctgcttccatggttcctatcacacggccg
gctcagtcctcctaccagactcctccttcaatgccaaaccacatttccagggcccccagc
ccagccccatttcaacggtctctagaaaacagaatgtcccccaataaatctccttacatg
tcgtccatgaagatgcagaaagttgggcctccggttcaagcctctcaggttgctgttcca
caccatcatcctccctctgtaaggcacgagattacctttcctcctggttcagtggaagca
tcacaaccgctcttaaaagcaaggcgaaaacttacctcaaaggatactggagcaccagag
gcatggcgggttatgatgtccctcaagtccggccttctggctgaaagcacttgggcactg
gataccatcaacatcttactgtacgatgatagcactgtagcgacattcaacctctcgcag
ttgtctggtttcctggaactcctggtggaatatttcagaagatgcttgatagaaatattt
ggcattttgaaagaatacgaggttggagatcccggtcagaaggctctgcttgatcccgat
atatttaagaaagatgatgctaaagatattaaagatgatattatggaggagggagagggc
gaagaaatggacgaagcctgtggcgatggcgacaacgttcgagaagaaaatgatctatcg
gaaagtgaagacggtgaggtcagccgtgcagcgagcgatttgcaacttggtggggagaaa
ccaaagcaagccagtaagtttgacaggctaccattgaagattgtgaagaaggacctttgt
gtcgtggaccgtacaagtaaacttggtcgcgttcaggagtttgacagtggtttgcttcat
tggaagattggtggaggcgacacgacagagcacattcagacccactttgagagcaaaatg
gaaatactagcacgcaagagggtgtcgggatgtttaagtagcccggctatagagaagaag
acaaaagagcacgagaacaaagaaaacacaagtacagaagaacagccaggaaagagtatc
gcagcaacgatagatgatgtgttgtcagctcggcgtggcgtcttgccagaagaccattcc
aatggttcggcttctgagtcagaaaacaataaatttctctttggcatccacgaggcgaaa
aaactcagaaacataaagttgttggaggatgagccttgcagccatgacaatgcgccattg
tgcacagtctctgactggcgggactctttggcaaagcgttgtatttgtgtgtcaaacata
gttcgtagtttgtcttttgtgcctgggaatgacattgaaatgtcaaagcactcgggccta
atactcattttggggaaactgattttgctgcaccacgagcacccggaacggaagcggacg
ccgcggacatacgagaaggaggaagaggaggacgaaggggtgacctgcagcaaagacgaa
tggtggtgggattgcctggaggttttacgggaaaacaccttagttacattagccaacatt
tctgggcagctggacctgtctatttacccagaaagcatttgtttgccaattttggatggc
ttgctacactggatggtatgtccttctgcagaggcccaggatcctttcccaacagtggga
ctgaattcagtcctgtcaccgcagcgacttgtgttggaaactttatgtaaactcagcatt
caggacaacaacgtggatctcatccttgcgactcctccgttcaatcgtcaggagaaacta
tacgccactttggttaggtacgtgggggaccggaggatttcagtctgccgagaaatgtcg
gttgccctgttgtcaaactttgcccggggagacacgttggtcgcaagagcgattgcggtg
caaaaaggaagcatcagcaacctaatcagctttctggaggatggcatcactgtggcccaa
cttcagcacagtcaaccgaacctgatgcacatgcagcctccaccagttgagccaacaagc
gcacacatgatgtgccgggcagccaaggctttacttgccatggctagagtagaagagaac
cgctctgagtttgttttacaagagggtcgcttgctagatatttctatctcatcagttctg
aacactatggttgcatctgtcatttgtgacacactgttcataatcggtcagttatga
DBGET
integrated database retrieval system
