Leucoraja erinaceus (little skate): 129700046
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Entry
129700046 CDS
T09122
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129700046 (nrde2)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129700046 (nrde2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
OmdA
SR-25
Motif
Other DBs
NCBI-GeneID:
129700046
NCBI-ProteinID:
XP_055496192
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All DBs
Position
9:complement(16931139..16975538)
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AA seq
1148 aa
AA seq
DB search
MEPPSASLFPAFTGTAATSAGSAAGLDWLSNRSFRTEDALQLHQRMVGIAADSPQGSPQA
STYSDRDASGTLSPRLVVSGEEHPAAKKKKKKKKHHRHKKEKKKSRERDHSSGNSDPELL
WEKGKQPSTVRNDVCADLPAGEFMWLDDIQSLSGQSFCIDRKADPANWMYKSLYRGDLAR
YKRKGDVCIGLNPKKQQILWEGPKQQKKKRAKRREDRYYSTSSLQQLRIDAVAVRCEDAS
QGNTPAVAPAFIPVPDWEESESRSSGPVSWVNPLGIYDASTSLWLQGKGRPEQEDKGRVP
TDSGEEVNAAMLAKVERFNRLLREDSSNVQTWMEFVHFQDELMQGPNPFTAATGESEKRK
RSRRMVLEKKLAILERGIESNPSRVELKVARLQLCQEAWEPSSLVNEWKKVVFLHPNDTA
LWQRYLLFCQSQFSTYSTSKVNGTYSKCLSTLAAALDGTLVSHPTLPGTEEAMLAIFLQQ
CHFLRQAGHSEKAIALFQALIDFTFFKPDSVAGLTTKAQVEFFEPFWDSGEPRFGEAGAR
GWKAWMRQQEKGGWIILNEEGEDEEEDEDGEEIKDKSRPKWQLWMQVEGARDAKHWLPWR
AKKVKGQAEEDCEDPDRQVLFDDIGDSMFRICSPGLKFQLLSCFLRFLGVPAGSELPPSC
LNLALDEPALLASGSEGAMLADGSGPSAGGVAAVGLLDAGPRLGTGHCRAGEEFIRFVFQ
QALPHLSGEEQSELALSWLLYEKSKVVQNLRLGSKRVKPQGKRSKRLAKRLLKEPANRNS
LALWREFAHLEWLLGNVDESRRVFHTAVSSDAAQGLSSSSLCRLCLLYASLELEVVGHAA
CPRALHVLTRLAQGDGRPFAGDVPAVDVLKARRSYEQAARSLPADPNHLASLAGCYALFL
YLTAGLQAADTLYQQAADWLDVLPLPAESAPAASSHVSASRRLATMHVALLWFHARAGPR
PRRPLVDALQAALRRFPGSPRLWRLFVRLASTAPHSGSTARRFFHSLTRANRGDILPWLF
AIHAEEQRKQRIDSVLRAGAGMEHSMVPETGLDNRIAALFEHAVGSEAGAHCVLLWRMFL
RFTAARGDVGRTRGVFYRALQHCPWAKVLYLDAVRLLPERLQEITDLMTEKEIRLRLPLE
ELDILVED
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggagccgccgtcggcctcgctctttcctgccttcaccgggaccgcagcgaccagcgcc
ggctccgccgcaggattggattggctcagtaatcggagcttccgcactgaggatgccctg
cagctgcaccaacgcatggtggggattgcagcagactcgccccaggggtcaccgcaggca
agcacttattccgaccgtgatgcgtctgggacactgtcccccagattggttgtcagcggg
gaagagcaccctgcggccaaaaagaagaaaaagaagaaaaaacatcatcgtcacaaaaaa
gagaagaagaaaagccgagagagagatcattccagcggtaactctgaccctgagctcctc
tgggagaaaggcaagcagcccagcactgtgaggaatgatgtctgtgccgatcttcctgcg
ggtgaattcatgtggctggatgacattcaatcgctttctggccagagcttctgcatcgac
aggaaggctgatcctgccaactggatgtacaaatcgctctatcgtggcgacctggcaagg
tacaagaggaaaggggatgtctgcattggccttaaccccaaaaagcagcagatcctttgg
gaaggtcccaagcaacagaagaagaagagggcgaagaggagggaggatcgatactacagc
acatcgagccttcagcagctgaggattgacgcggttgccgtccgttgtgaagatgcttcg
cagggcaacacccccgctgtcgcgcctgccttcatccccgtgccggactgggaagagagc
gagagtcgatcgtcgggccccgtcagttgggtcaatccgctggggatctacgacgcttcc
accagcctgtggctgcaggggaagggacggcccgagcaggaagacaaaggccgcgtcccc
acggactccggtgaggaagtgaatgccgccatgctggccaaggtggagaggttcaacagg
ttgctgagggaggactcgagcaacgtccaaacctggatggagttcgttcattttcaggat
gagttaatgcaaggtccaaatccgttcacggcggccacgggggaatctgagaagaggaag
aggtcacggcggatggtcctggagaagaagctggctattttggagcggggcatcgagagc
aaccccagccgggtggagctgaaggtggcccgtctgcagctgtgccaggaggcctgggag
ccgtccagcttggtcaatgagtggaagaaagtggtcttccttcaccccaacgacaccgcc
ctgtggcagcgctacctcctgttctgccagagccagttcagcacctactcgacgtccaag
gtcaatggcacctacagcaaatgtctcagcaccctggcggctgccctggacgggacactc
gtgtcccatcccacccttcccggcaccgaagaagccatgctggcaattttcctgcagcag
tgtcatttcttgcggcaggccggccattcggaaaaggccattgccctcttccaggctctg
attgacttcaccttcttcaagcctgacagcgtggccgggctgacgaccaaagcacaggtg
gagttcttcgagccgttctgggatagcggtgagccccggtttggagaagcgggagcgaga
ggttggaaggcctggatgcgacagcaggagaaaggtggatggattatcctgaacgaggaa
ggagaggatgaggaagaggatgaagatggggaggagatcaaggacaagagccgacccaag
tggcagctctggatgcaggtagaaggtgcccgcgacgccaagcactggttgccatggcga
gccaagaaggtgaagggtcaagcggaggaggattgcgaggatcctgacaggcaggtgctg
tttgatgacattggggactcgatgttcaggatctgcagccccgggctgaagttccagctc
ttgtcctgcttcctgcgtttcctgggggtccccgccggctcggagctgcccccctcctgc
ctgaacctggcgctggacgagccggccctgctggccagcggatcggagggcgccatgctg
gcggacggctccggcccttctgccggcggggtggcggctgtcggcctcctggacgcgggg
ccccgactggggaccgggcactgcagggccggggaggagttcatccgcttcgttttccaa
caagccctgcctcatctctccggggaagagcagtcggagctggctctgagctggctgctc
tacgagaaatccaaggtggtgcagaacctgcgtctgggaagcaagagggtgaagccgcag
ggcaagaggagcaagcggctggccaagaggctgctgaaggagccagccaaccgcaacagc
ctggccttgtggagggagtttgcccacctggagtggctgctgggcaacgtggacgagtcg
cggcgggtcttccacacggccgtgtcctccgatgccgcgcagggactgtccagctcctcg
ctctgccggctctgcctcctgtacgcctcgctggagctggaggtggtggggcacgcagct
tgtcctcgcgccctgcacgtgctgaccaggctggcccagggggacgggcggccgttcgcc
ggtgatgtgccggcggtggacgtgctgaaggcgcggcggagctacgagcaggcggcacgg
agtctccccgccgaccccaatcacctggccagcctggccggctgctacgccctcttcctc
tacctcacggcgggcctgcaggccgccgacacactctaccaacaggcggccgactggctg
gacgtgctgcccctcccggcggagtcggcgccggccgcatcctcgcacgtgtccgcctcg
cgccgcctggccaccatgcacgtggcgctgctgtggttccacgcccgggcgggcccccgc
cccaggcggcccctggtcgatgcactgcaggctgccctgcgccgcttccccggcagcccg
cgcctctggcggctcttcgtgcggctggccagcaccgcgccgcacagcggcagcaccgca
cgccgcttcttccacagcctcacccgcgcaaacagaggcgacatcttgccatggctgttc
gccatccacgcagaggagcagaggaagcagcgcatcgactcagtactgagggcgggtgct
gggatggagcacagcatggtgccggagacgggcctggacaatcgtatcgcagcgctgttt
gagcacgccgtggggtcggaggcaggagcgcactgcgtcctgctctggaggatgttcctg
cggtttacggcggcgcgaggggatgtggggcggacgagaggagtgttctacagagcgctg
caacactgtccctgggccaaggtgctgtacttggacgcagtccgtctgctacccgagcgg
ctgcaagaaatcactgacttgatgaccgagaaggaaatccgcctccgtcttcccctcgaa
gagctggacattctggtggaagattaa
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