Leucoraja erinaceus (little skate): 129701250
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Entry
129701250 CDS
T09122
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129701250 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
leri03041
]
129701250 (prpf38b)
Spliceosome [BR:
leri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129701250 (prpf38b)
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Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
129701250
NCBI-ProteinID:
XP_055498358
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Position
10:55589813..55608639
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AA seq
553 aa
AA seq
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MANKTAIGNHQQQPQQQQPPPQQAGGSAKPASTIKQGNVLPLWGNEKTMNLNPLILTNIL
SSPYFKVQLYELKTYHEVVDEIYFKVTHIEPWEKGSRKTAGQTGMCGGVRGVGTGGIVST
AFCLLYKLFTLKLTRKQVMGLITHTDSPYIRGLGFMYIRYTQPPADLWDWYEPFLDDEEE
LDVKAGGGCVMTIGEMIRSFLTKLEWFSTLFPRIPVPVQKNLDQYLKTRPRKIGKKDGKD
AVEDIERVSERRHSRSPRRSLSPRKSPRRSRSRSRHREGHGSFGFDKELERERERQKRER
EQVKDRERSEKDRHKSRSTDRGIDRRRSRSRDRHRSRSREKRNDKKDRDKEREKENERSR
RRDKDYDKDKERVSDRDRERIVEKELERSRDRDKRSRSKTEDRKRKEERREKDERKHKDD
KKDSRKDKKHSRSRSREKRHRSISPGKGHVSKRSRSKSKEKSKHRNEHKEKSNKRSISRE
RTDENDSEQLKKQCSHGKERAHKRSRSKERSHKQSHGDGKDQTGKPSHRSLSTEREDKSN
AEGWLQGSTTDDE
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaaaacggccattggaaaccaccagcagcagccgcagcaacagcagccgccg
ccgcagcaagccggtggaagcgccaaaccggcctccaccatcaaacaaggcaacgtgctg
cccttgtggggcaacgagaagaccatgaacctgaacccgcttatcctcaccaacatcctt
tcctcgccctacttcaaagtgcaactgtatgaactgaagacttaccacgaggtcgtggac
gagatctatttcaaggttactcacattgagccatgggaaaaagggagcaggaagactgca
ggccagacaggaatgtgcggaggggttcgtggtgttggaacaggaggtattgtttcaact
gccttttgtctactgtacaaactgtttaccctgaagttaactcgcaaacaagtgatgggt
cttataacacacactgactctccatacatccgcggtttaggattcatgtatattcggtac
acacaacctccagctgacttgtgggattggtatgaaccctttttagatgatgaagaggag
ctagatgtaaaggccggaggagggtgtgtcatgactataggagaaatgattcgttcgttc
cttactaaactggaatggttctctactttattcccaagaattccagttccagttcaaaag
aatctggatcaatatctcaaaactcgccccaggaaaattggcaaaaaagacgggaaagat
gcagtagaagacattgaacgtgtctcagaacgtagacattcaaggtcaccacgaagatcg
ctaagtcctcgtaaatctcccaggcggtctcgaagcagaagtcgtcatagagaaggccat
ggttcctttggttttgataaggaattggaaagggagcgagagcggcagaaaagggaacga
gaacaggttaaagacagagagaggagtgagaaggatagacacaagtcgagaagcacagac
aggggcatagaccgcaggcgaagcagaagcagagatcgtcacagaagtcgaagcagagag
aaaaggaatgataaaaaagatagagataaagagcgggagaaggaaaatgaaagaagcaga
aggagggacaaggattatgacaaagataaagaaagggtaagtgatagagatagggagcga
attgttgaaaaagaactggagagatctagggaccgagataaacgtagccgatcaaagacc
gaagacagaaaacgtaaggaagagaggagagaaaaggatgaaagaaaacataaagatgat
aaaaaggattcgagaaaagataaaaagcatagcagaagtaggagcagagagaaaaggcat
cggagtattagtcctgggaagggtcatgtcagcaaacgcagcaggagcaaaagcaaagaa
aaatcgaaacatcgaaatgaacataaagagaaatcaaacaaaagaagcattagcagagaa
aggactgatgagaatgacagtgaacaactaaagaaacagtgtagccatggtaaagagaga
gctcacaaacgcagtcgaagcaaagaacgatctcacaaacaaagtcacggtgatggtaag
gaccaaacaggcaaaccaagtcacagaagtctcagtacagaaagagaggacaaatccaat
gcagaagggtggttacaaggcagtaccactgatgatgaatga
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