Leucoraja erinaceus (little skate): 129701448
Help
Entry
129701448 CDS
T09122
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03020
RNA polymerase
leri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129701448 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
129701448 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129701448 (polr2b)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129701448 (polr2b)
Enzymes [BR:
leri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129701448 (polr2b)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129701448 (polr2b)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129701448 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
129701448
NCBI-ProteinID:
XP_055498611
LinkDB
All DBs
Position
1:complement(122635740..122694660)
Genome browser
AA seq
1176 aa
AA seq
DB search
MYDPDEAEDTQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRI
VEDAPPIDLQAEAQHTTGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNL
TYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECP
LDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVS
MLARGGQGVRKSAIGQRIVATLPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMM
EMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEILQKEVLPHVGVSDFCE
TKKAYFLGYIVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIY
SQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAST
LSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPDQLMTTLRKLRRQMDIIV
SEVSMVRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVA
SGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINS
IVAIASYTGYNQEDSVIMNRSAVDRGYFRSVFYRSYKEQESKKGFDQEEVFERPTRETCQ
GMRHAIYEKLDEDGLIAPGVRVSGDDVIIGKTVTLPENEDELDSTNRRYTKRDCSTFLRT
SETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC
EGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDY
GYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGR
SRDGGLRFGEMERDCQIAHGAAQFLKERLFEVSDPYQVHVCNLCGLMAIANTRTHTYECR
GCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMIS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatccagacgaggccgaggatacacaatatgatgaggatgatgatgaaattacg
cctgatttgtggcaggaggcatgctggattgttatcagctcctattttgatgaaaaaggt
ttggttcggcagcaattggactcgtttgatgaatttatacaaatgtcagtgcagagaatt
gtggaagatgctcctccaatagatctccaagctgaagctcaacatacaaccggagaagtg
gaagaaccgcctaggttcttactaaagtttgaacaaatttatttatccaaaccaactcat
tgggaaagggatggggcaccatctccaatgatgccaaatgaagcaagactacgaaatctt
acgtattcagctcctctctatgtagatattacgaaaacagtgattaaggagggagaggag
caactgcaaacacaacatcagaaaacctttattgggaagattcctataatgcttcggtcc
acttattgtcttctaagtggtttaacagatcgtgatctctgtgagctcaatgaatgccca
ctggaccctggtggttatttcatcatcaatggatcagaaaaggttttgatcgcacaagaa
aagatggcaacaaatacagtgtatgtgtttgcaaagaaagactccaaatatgcatacacg
ggggaatgtcggtcctgtctagagaattcatctcgtcccacgagtaccatctgggtcagc
atgctagcaagaggaggacaaggtgtaagaaaaagtgcaataggccaaagaatagttgcc
actctaccatacatccgacaagaaattcccataattattgtgtttcgagctttaggattt
gtgtctgatagagacattctggaacacattatttatgactttgatgatccagaaatgatg
gaaatggtgaaaccttctctggatgaagcatttgttatccaggaacaaaatgttgcttta
aatttcatcggttcaagaggtgcaaaacctggtgtaacaaaagagaagagaattaaatat
gcaaaagaaattctgcagaaagaagtgcttccacacgttggagtcagtgatttttgtgag
accaaaaaagcttatttcttgggttacatagtgcatcgattgctgttagctgctttaggt
cgaagagaattggatgacagagatcactatggcaacaaaagactggatctggcaggacca
ctgcttgctttcctcttcagaggaatgtttaagaacctactgaaagaagttcggatatac
tcccagaagttcatcgacagagggaaagatttcaacctggaattagcaatcaaaacaagg
attatttctgatggactgaaatattcacttgcaacaggaaattggggagatcaaaagaag
gctcatcaagccagagctggtgtctcgcaggtgttgaaccgtttgaccttcgcttcaacc
ttgtctcatcttcgtcgtcttaactctccaattggaagagatggaaaattagcaaaacct
agacagctccataatactctgtggggtatgatctgccctgctgagacaccagagggtcat
gctgttgggcttgtgaaaaatctagctttgatggcttacatttctgttgggtctcagccc
tcgcctattttggaattcttggaggagtggagtatggaaaatcttgaagaaatctctcct
gcagctattgcagatgctacaaagatttttgtcaatggttgttgggttggaatacataaa
gatcctgaccagttaatgactacactaaggaaacttaggcgtcagatggacatcattgta
tctgaggtatccatggtgagagatatacgtgaacgtgaaattcggatttatacagatgcg
ggtagaatttgtcgaccacttttgattgtggagaaacagaaactgctgctgaagaaaagg
cacattgatcagctgaaagaacgagaatataacaattacagttggcaggaccttgtggca
agtggtgtggtggagtatattgatacgctggaagaggagactgtgatgttggctatgact
cctgatgatctgcaggaaaaaggtgttgcttactgttcaacatatacacattgtgagatt
catccatcaatgatacttggtgtttgtgcatcgattattccattccctgatcataaccag
tctcccagaaatacgtatcaatctgctatgggtaaacaagctatgggagtttatattacc
aactttcatgtgcgaatggacactctagcacatgtactgtactacccacaaaaacccctt
gttacaacacgttccatggagtacctgcgattcagggagctgccagctggtataaactct
atagtagcaattgcttcgtacactggttataatcaagaagattctgtcatcatgaatcgg
tctgcagtggacagaggctatttcaggtctgtattctaccgttcatataaagagcaagaa
tccaaaaaaggttttgatcaggaggaggtatttgagaggcctacacgagaaacttgccag
ggtatgaggcatgctatttatgagaaactggatgaagatggattaatagcacctggtgta
agggtgtcgggcgacgatgtgatcattggtaaaactgtaacattgccggaaaatgaagat
gagcttgacagcacaaaccggcggtacacaaaacgagactgcagcaccttcttgcggaca
agtgagactggcattgtggaccaggtcatggtgacgttaaaccaggagggatacaaattt
tgcaaaattagggtgcggtcagtccgaattccacaaattggagataaatttgccagtcgc
catggccagaagggtacatgtggtatccagtacagacaagaggatatgccattcacctgc
gaaggtatcaccccagatattataatcaatccacatgccattccttctcgaatgacaatt
ggtcacttgattgagtgtctgcaagggaaggtatcagcaaataagggtgaaattggtgat
gcaacacctttcaatgatgctgttaatgtgcagaagatttctaacctattatcagactat
gggtaccacctccgaggcaatgaggttttatacaatggatttacagggcgtaaactcaca
tcacagatctttattggtcccacttactaccaacgtctgaaacatatggtggatgacaaa
attcattcccgtgcacgaggacctgttcagatccttaatagacaacctatggagggtaga
tctcgcgacggtggtctacgttttggggagatggaacgagattgtcagattgctcacggt
gcagcccagtttttgaaagagaggctgtttgaggtttctgatccatatcaggtgcatgta
tgcaacctatgcggactcatggcaattgccaatactagaacacacacttacgaatgcaga
ggatgccgtaacaaaactcagatttcgttggtacggatgccctatgcctgcaaacttctc
ttccaggagttgatgtcaatgagtattgcaccacgaatgatgatttcataa
DBGET
integrated database retrieval system
