Leucoraja erinacea (little skate): 129701511
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Entry
129701511 CDS
T09122
Name
(RefSeq) protocadherin gamma-B2-like isoform X1
KO
K16499
protocadherin delta 2
Organism
leri
Leucoraja erinacea (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129701511
Cell adhesion molecules [BR:
leri04515
]
Cadherins
Protocadherins
129701511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
129701511
NCBI-ProteinID:
XP_055498717
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All DBs
Position
11:complement(21089155..21304718)
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AA seq
1043 aa
AA seq
DB search
MGYCRRHCLGKWHLLYYLFSFWPLVSGQIRYSIPEELQLGSFVGNIAEDLGLDARELSAR
KFRIVPGIGKTYLDVNLDNGILFVKERIDREQLCGSSLTCLLPMEAVVENPLNVYRVEVE
VLDINDNAPSFPKNQFRLEIAEFVAPGARFPLECAHDSDVGSNSLQSYRLVGNQHFALDI
ETRSGDEKLPVLTLERALDREKEPTHKLQLIAKDGGIPPKSSTAEILIAVQDVNDNSPVF
SQSVYRVSLHENVPKGTLVIKLNATDLDDGSNGEIEYSFTSHTSASVRELFDLHSKTGEI
TVKGNLDNELNRAFEINVQAADKGSVPLPVYCRVHVDITDENDNSPEVTVTSLFSPVSED
SPPGTVIALISTTDKDSGENGEIDCQISNDLPFKLESPLTNYYKLLTVGQLDRESIPKYD
VTVLCTDSGSPPLTSKKIMQVEISDVNDNGPRFSQSSYTAYVTENNVIGASIITVTASDP
DMNQNGKLSYSIPGNQIHGVSVASYVYINSENGMVFSQRSFDYEELKNFQFQVQARDSGV
PSLTGNVSVEVVILDQNDNAPVILHPLPERGSTVMETMSRSAEPGYLVTKVSAMDADSGQ
NARLSYQIGQATDPGLFTISPDTGEVWIIRGLVQKDATKQKLIIVVKDNGTPSLSASMTI
SLSVIDGDAQLLSDVSGFLDDAAFQSALSFYLVISLGAISSIFLLILIVLAVKVHKSRNG
FGVYSCYGDVCCCYRPRRSFNGIQKASRNIQIPPNYVEVFGGDPLSQSFRYGTNSTLGCT
KRDSRFPDTCSSSTMAYKVGGGPNEKYDYLHSQAAANDRNTVNAEVKQPNADWHFSQAHR
AELNSSQYLEEEGARREIQCEVQREVQRDVQREPLRDEPCEAPRNIQRDVPRDSHCDGQR
AAENDPGGPRKPMCARPPAIPAGRDGWTLPRTAPRMQLQMTLGAHVPGTLRSQYLFPRDP
LTPGARISNSSVEFSAFPVGSHHGPWAANQTRDRGSVTDSGTRRPELDTETGGEIHRSPP
SVRLPTQRLHSRDHHHALRQIND
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggatattgtagaagacattgcttgggaaaatggcatctgctgtattatctgttctcc
ttctggcctctggtttcgggacaaattcgttattctattcccgaagaactgcagcttggt
tcctttgttggtaatatcgcagaggatttgggtttggatgcgagagagctctcggctaga
aaatttcgcatcgtgcccgggatcggcaaaacatatttggacgtgaatttagacaatggg
attttgtttgtgaaggaacgtatcgacagggagcagctttgtggatcgagccttacttgc
cttttacccatggaagcagtggtggaaaatcctttaaatgtctatcgggtcgaagtggag
gttttagacattaatgacaacgctcctagttttccaaagaatcagttccgtcttgaaatc
gctgaatttgtggcgccgggtgcccgcttccctctcgagtgcgcgcacgattcagacgtg
ggaagcaactccctacaaagctatcgcctggttggaaatcagcacttcgcgctcgacatt
gagacccgcagtggggatgagaagctgccggtgttaacgctggagagggcattggataga
gagaaagaaccaactcacaagttacaactaattgcaaaagacggtgggatccctccaaaa
tcatccactgctgaaatactaatcgcagtacaggatgtgaacgacaactcccccgtgttc
tcgcagtcggtgtatagggtcagcctacatgaaaacgtgcccaaaggaacactagtgatt
aagcttaatgccactgacttggacgatggttctaatggggagatagaatattcctttacc
agccacacctccgcctcggtacgtgaactgtttgatctacattccaaaacgggggaaatc
acagtgaagggaaatttggacaatgagttaaaccgtgccttcgaaatcaacgtccaggca
gcagataaaggctctgtcccgctacctgtgtactgccgtgttcatgtggatattacagac
gagaatgacaactctcccgaggtgaccgtaacttctttattcagtccagttagcgaagac
tctcctccggggaccgtgatagctctgattagcactacagataaagactctggggaaaac
ggagagattgattgtcaaatttcaaacgaccttccctttaagctggaatcgcctttaaca
aactattacaaactgttaaccgtggggcaattggatcgcgaaagtatccccaagtacgat
gtcactgtactttgcactgattcaggatcacccccacttacttccaagaagatcatgcag
gtggagatctcggatgtaaatgacaacgggcctcgtttcagccaatcttcatatacagct
tatgtgaccgagaacaacgtcataggagcctcgatcataacagtgactgcttcagatcct
gatatgaaccagaatggcaaactatcttattccattcccggaaaccagatccacggtgtg
tcggtagccagctacgtgtatattaattcagagaatggaatggtattttcgcaaagaagt
tttgattatgaggagctcaaaaacttccagttccaggtacaagcacgggatagcggagtc
ccgtcactcacgggcaatgtttccgtggaggttgttattcttgaccagaacgacaatgcc
ccggttattctccacccattgcctgaacgtggatcaacagtcatggagaccatgtctcgc
tctgcagaaccaggttatttggttaccaaagtgtcggccatggatgctgactcgggtcag
aatgctcgcctctcctaccagatcggccaggccactgacccgggactgttcaccatttca
cctgacacgggcgaggtgtggattatccgtggattggtacagaaagatgcgaccaagcaa
aagctaataattgtggtgaaagacaacggaacgccgtcgctttcagcttccatgaccatc
agtttgtcggtgatcgatggggatgcccagctactgtctgatgtctctggttttctcgac
gatgctgcattccagtccgcgttgagtttctacttggtgatatctctgggggcaatttca
tccatttttctgctgattttaatcgtcctcgccgtgaaggtccataaaagcaggaacggc
tttggtgtttacagttgttacggggacgtctgctgctgttataggccaagacgttctttc
aatgggattcagaaagccagtagaaacattcagatacctccaaactatgtggaggtgttc
ggaggcgacccgctttctcaaagttttcgctatggaactaattcgactttaggttgcact
aagagagattcacgatttcccgacacttgtagttcatccacaatggcatataaagtcggg
ggtggtcctaatgagaaatacgattacctgcactcgcaagctgctgcaaatgatagaaac
actgtaaatgctgaggtgaaacaaccaaacgctgactggcatttctcacaggctcacaga
gcagaactaaacagttcccagtatctggaggaggaaggagcacgacgtgaaatacaatgt
gaagtccagcgtgaggtgcagcgggacgtgcagcgcgagccactgcgtgacgagccctgc
gaagcaccgcgcaatattcagcgtgacgtgccgcgtgactcgcactgcgacgggcaacgt
gctgcggagaatgatcctggcggaccaaggaaacccatgtgcgcacggcctccagccatc
ccagccggtagagatgggtggacattaccacggacagctccacgaatgcagctacagatg
acgctaggtgcacacgtaccagggaccttgcgaagtcagtacctattcccccgagaccct
cttacgccaggagcacgtatcagtaattcaagcgtggagttcagtgcgttccctgttggc
agccaccacggtccttgggctgcaaaccagacacgagatcgtggaagcgtcaccgattcg
ggcacccggagaccagagttggacaccgagactggcggtgaaattcaccgctcaccgcca
agcgtccgactacctacacaacgtctacattccagggaccaccaccacgctctccggcaa
atcaacgactga
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