Leucoraja erinacea (little skate): 129701531
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Entry
129701531 CDS
T09122
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin alpha-C2-like
KO
K16499
protocadherin delta 2
Organism
leri
Leucoraja erinacea (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129701531
Cell adhesion molecules [BR:
leri04515
]
Cadherins
Protocadherins
129701531
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_3
DUF4625
Motif
Other DBs
NCBI-GeneID:
129701531
NCBI-ProteinID:
XP_055498754
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Position
11:complement(21927261..21930730)
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AA seq
793 aa
AA seq
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MAHIRRFALTVFACMFVICAPGPISGQIRYSIPEEMEQGAFVGNIAVDLGLNVRQLSARK
FRLNSDDGGRYMKVSLDNGIMSIRERIDRERICGQNDKCTVYFETILETPXEVYHGELAI
LDVNDNSPTFPQSSIVLQISEASAPGVRFRLEGADDPDIGTNTVAAYTISSSEHFSLRTQ
KTEDGIMIADLLLGKSLDREQQSSFQLLLTATDGGTPQRSATAHILITVLDNNDNPPVFD
HDIYRGSVSENASRGYVGAQSKANDLDEGLNSELTYCFSDISLIRARKLFSLDPVTGELR
VKGLLDFEQVNSYSLDIRAQDHGSPAMTGHSKVLIKVTDANDNAPEIKVPSPCNKIPENA
PPGSFICLINVMDRASGANGQVRCELRQKNVPFRLQKVSNNYKLTTSETLDREAIAEYNI
LISAWDLGSPSLSSNTTIQIAISDVNDNEPQFTESSYNIYIMENNAPGVSVSTVTATDPD
LDQNSYISYSFLDNHIQNVPISTYLTINSINGTIYALRSFDYEELKNFQINVQARDSGVS
PLSSSAMVNVIILDQNDNAPVIVSPSEQSGSSSVDTVPRSAGQGYLVSKIMATDADSGQN
AQLFFQIVKSTDPGLYNVGQRSGDVRTSRNIFQSDTAVQTIVILVRDNGQPCLSSTVTMN
IRVLENSTEGITESSTLVKNPVYFSDPNVYFIIIFSCTSVVFLLIIGLLIGIKCKQDRSI
IQGYNTPSYCYXGGELHGTFNGRPAIEETLRYPRTGRVGRVPEPHHYSVCLSPESAKSDF
LFLKPYGAPTSQA
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacatacggaggtttgccctcacagtatttgcttgcatgtttgtgatatgtgca
ccgggtccaatctccgggcaaattcgttattctattcccgaggaaatggagcaaggggca
tttgttgggaatatcgctgtggatttgggcctgaatgtacggcaactgtcagctcgcaaa
ttccgactgaactctgatgacggagggcggtacatgaaggtcagtttggacaatggaatc
atgtctattcgtgaaagaatcgaccgggaacgtatttgtggacagaatgataaatgcact
gtatatttcgaaacaatactggaaaccccgntggaggtgtatcacggggaattggcgatt
cttgatgtaaatgacaattcccccactttcccgcagagcagcattgtcttgcagatatcg
gaagctagtgcacccggtgtacgtttccgactcgagggcgcggatgatcccgacattggt
acaaataccgtggccgcttatacaatcagttccagtgagcactttagtctaagaacacag
aaaaccgaagacggtattatgattgctgacttgctgttagggaaatctttggaccgagag
cagcaatcatcatttcaactcttgcttacggcgactgatggtggcacccctcagagatca
gccacagctcatattctcattactgtattggacaacaacgataatccacctgtgttcgat
catgatatttacagaggcagcgtaagtgagaatgcgtcgcgggggtacgttggtgctcag
tcaaaagcaaatgatttggacgaaggactgaattcggagctgacatattgttttagtgat
atttctttgataagagcgcgaaaattattcagtttagacccagttactggggagcttcga
gtcaaagggcttctagattttgaacaagtaaacagctattctctggatattcgagcccag
gaccacggttcccctgcaatgacaggacactccaaagtactgatcaaagtcactgatgcg
aacgacaacgcacctgagataaaggtaccatcaccttgcaacaaaatcccggaaaatgcg
ccaccaggaagtttcatatgtctgattaatgtgatggatcgtgcttctggagcgaacggt
caagtacgttgcgagttaagacaaaagaacgtcccatttcgactgcaaaaggtatcgaac
aactataaattaaccacgagtgaaacgttggaccgtgaagccatcgctgagtataacatt
cttatttcagcctgggacttggggtcgccgtcactctcatcaaatacaaccatccagatt
gcaatttcggacgttaacgataacgaaccacaattcacagagtcatcctacaacatatat
ataatggagaacaacgctccgggtgtgtccgtttccacagtaaccgcaacagatcctgat
ctggatcaaaattcctatatttcctactcctttctcgataaccatatccaaaacgtgcca
atatccacttacctcactatcaattcaattaacggtaccatttacgcactgcgttccttt
gattatgaggaactaaaaaacttccagattaatgttcaagcccgtgactccggggtgtct
ccgttgagtagcagcgccatggtgaatgtgatcatcctggatcaaaatgacaacgcgccg
gtaatagtttcaccttcagaacaaagtggctcatcatcagtggataccgtaccccggtca
gcgggtcaagggtacttggtcagcaagataatggcaacggatgcagattctggtcagaac
gcacagctcttttttcagatagtgaaatctaccgaccccggtttgtacaacgtcggacaa
cgttccggtgatgttagaacatcgcgcaatattttccagtccgacactgctgtacaaact
atagtcatcttggtcagggacaatgggcagccatgcctgtccagcacagttacaatgaac
attcgagttttggaaaacagcactgaaggaatcaccgaaagcagtacattggtgaagaat
ccagtatatttctctgatccaaatgtgtactttatcataattttcagctgcacttccgtt
gtgtttcttctgatcatcggtctgttgattggcatcaagtgtaaacaggacagaagtatt
atccaagggtataacacccccagttattgttacnatggtggagagttgcacggtacgttt
aatggtagacctgccatagaggaaactttacgctatcccaggacaggccgggttggccgc
gtgccggaaccgcatcactactcggtctgcctttctccagaatcagcgaaaagtgatttt
ctcttcttgaagccatacggcgctcccacgtctcaggcctaa
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