Leucoraja erinacea (little skate): 129701532
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Entry
129701532 CDS
T09122
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16499
protocadherin delta 2
Organism
leri
Leucoraja erinacea (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129701532
Cell adhesion molecules [BR:
leri04515
]
Cadherins
Protocadherins
129701532
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
129701532
NCBI-ProteinID:
XP_055498755
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Position
11:complement(21936401..21941694)
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AA seq
794 aa
AA seq
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MAYLPRFAFTAFACIFAICAPGLISGQIRYSIPEEMEQGAFVGNIAVDLGLNVRQLSARK
FRLSSDDGGRYMKVSLDNGIMSIRERIDRERICGQNDQCAIHFETILENPFEVSDGELEI
LDVNDNSPTFPQSSIALQISEASVSGIRFRLEGADDPDIGTNTVAAYAISSNEHFSLETQ
KSEDGIIIAELVLEKSLDREMQSSFQLMLTAFDGGAPQRSATTQVLITVFDQNDNPPVFD
HDIYRSSVSENASRGTLTLKVQANDLDEGLNAELTYRFNDVALRAVQHVFRLDPRTGEIR
VQGPLDFEEVNTYSLDIRAQDHGSPAMTGHSKILIKVIDVNDNAPEIKVTSASNTIQENT
PSGSFISQIYVMDRDSAANGQVRCEIQKNVPFRLQKTSNHYKLVTSETLDREAISEYNIV
ISAWDLGSPSLTSNKTIQIAISDVNDNAPQFAESSYNVYVMENNAPGVSIFTVTATDHDL
DQNSYLSYSFLDNHIQNMPVSTYLSINSMNGTIYALRFFDYEELKNFQIHVQARDAGVPP
LSSSVTVNVIILDQNDNAPVIISPSELSESAAVDTVPRSAGQGYLVSKIMATDADSGQNA
RLFYQIVKSTDPGLYNVGQRSGEVRTARNIFQSDTALQTLVILVKDNGQPSLSSTVTMNI
RVLGNSSEGISESSTLVKTPEYLSDPNVYLIVIFSCTSVVFLLIIILLIVIKCKQDRNII
QEYNTPSYCYNHGVSHGTFNGRPAMEETLCYPGTGRVVRGAELNQYSVCLSPESAKSDFL
FLKPRDASTSQAQS
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacctaccgaggtttgccttcactgcgtttgcttgcatatttgcgatttgtgca
ccgggactaatctccgggcaaattcgttattctattcccgaggaaatggagcaaggggca
tttgttgggaatatcgctgtggatttgggcctgaatgtacggcaactgtcagctcgcaaa
ttccggctgagctctgatgacggagggcggtacatgaaggttagtttggacaatggaatc
atgtctattcgtgaaagaatcgaccgggaacgtatttgtggacagaatgatcaatgtgct
atacatttcgaaacaatactcgaaaatccgtttgaggtgtctgacggcgaattggagatt
cttgatgtaaatgataattcccccacttttccgcaaagcagcattgccttgcagatatcg
gaagccagtgtatccgggatacgtttccgactcgagggcgcggatgatcccgacattggt
acaaataccgtggccgcctatgcaatcagttctaatgagcactttagtctagaaacacag
aaatccgaagacggtattataattgccgaattggtgttagagaaatctttggaccgagag
atgcaatcatcatttcaactcatgcttactgcgtttgacggcggggcccctcagagatca
gctacgacacaggttctgattacggtattcgaccagaacgataatccacctgtgttcgac
catgatatttacagaagcagcgtgagcgagaacgcgtcgcggggtacgttgacgctgaaa
gtgcaagcgaatgatttggacgaaggactgaatgcggagctgacatatcgtttcaatgat
gttgctttgcgagcagtgcaacatgtattcaggttggatccacgcactggggagattcga
gttcaagggcctttagattttgaggaagtaaacacctattctctcgatattcgagcccag
gaccacggttcccctgcaatgacaggacactccaaaatattgatcaaagtcattgacgtg
aacgacaatgcacccgagataaaggtaacatcagcttccaacacaatccaggaaaatact
ccatcaggaagtttcatatcccagatttatgtgatggatcgtgattccgcagctaacggc
caagtgcgttgcgagatacaaaagaacgtcccatttcgactgcaaaagacatcgaaccac
tataaattagtcaccagtgaaacgttggaccgtgaagcgatctctgagtataacattgta
atttcagcctgggacttggggtcgccttctctaacatcaaataaaaccatccagattgct
atttcggacgtaaatgacaacgcaccgcaattcgcggagtcatcctacaacgtatatgta
atggagaataacgctccgggtgtatccattttcacagtaactgcaacagatcacgatctg
gatcaaaattcctacctttcctactcctttctcgataatcatatccaaaacatgccagtg
tccacttacctctccattaattcaatgaacggtactatttacgcgctgcgtttctttgac
tatgaggaactcaagaacttccagatccatgtacaggcccgtgacgccggggtgcctccg
ttgagcagcagcgtcacggtgaatgtgatcatcctggatcaaaatgacaacgcgccggta
atcatttcaccttcagaactgagtgaatcggcggcagtggataccgtgccccggtcagcg
ggtcaagggtacttggtcagcaagataatggcaactgatgcagattctggtcagaacgca
cggctcttttatcagatagtgaaatctaccgaccccggtttgtacaacgttggacaacgt
tccggagaagtcagaacagcacgcaatattttccagtcagatactgctttacaaactcta
gtcatcttggttaaggacaatgggcagccaagcctgtccagcacagttacaatgaacatc
agagttttgggaaacagcagtgaaggaatcagcgaaagcagtaccttggtgaagacgcca
gaatatttatctgatccaaacgtttatttaatcgtcattttcagttgcacttccgtggtc
tttcttctgatcatcattctgttgattgtcatcaagtgtaaacaggacagaaatattatc
caagagtataacacccctagttattgttacaatcatggggtttcgcacggcacgtttaat
ggaagaccagcgatggaggaaacattgtgttatcctgggacgggacgcgtagtccggggg
gcagaactgaatcaatactcagtctgtctgtctccagagtcagcgaaaagcgattttctc
ttcctgaagccacgcgacgcttccacctctcaagcccaaagctaa
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