Leucoraja erinaceus (little skate): 129701535
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Entry
129701535 CDS
T09122
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16499
protocadherin delta 2
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129701535
Cell adhesion molecules [BR:
leri04515
]
Cadherins
Protocadherins
129701535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
DNER_C
Motif
Other DBs
NCBI-GeneID:
129701535
NCBI-ProteinID:
XP_055498758
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Position
11:complement(21958534..21962274)
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AA seq
792 aa
AA seq
DB search
MAYKNQKTRFACNVFACMLLVCAPDLITGQLRYSIREEMAEGAYVGNIALDLGLNVRQLS
ARKLRLSSDDGGRYMKVGSDNGVLSIHERIDRERICRHADMCTMYFKTILENPLEVYRGE
VEILDINDNPPNFGDGSIALQISEAIAPGVRFRLESAEDPDIGINTVTAYTISSNEHFSL
KTHTTEDGIMVAELLLEKYLDREVQSSYQLLLAAVDGGIPQRSATARVLITVVDINDNPP
VFDHDIYRSSLSENARQGAIVMKVNANDADEGMNAELTYTFSDVALRRARNLFSLDPDSG
EIRVEGPLDFEEATSYSLDIQAVDHGSPAITGHANVLIKVIDVNDNAPEIKVTSASNKIP
ENAPLGTLITFIDIIDRDSGENGQFHCEIPKNVPFRIQAASKLVTSETLDREVISEYILV
ITAWDLGSPSLTSNKTIRIAITDVNDNAPRFAASSYNVYVMENNAPGASIFALTALDDDQ
EQNGYISYSFVNNHIQNLPVSSYLTINPVNGTIYALRSFDYENFKNFQIKVQARDAGVPP
LSSSATVNVIILDQNDNAPVIVSPSEESGSAAAEVVPRSARQGYLVTTIMATDADSGQNS
RLFYQMTKSTDATLFNVGQNSGEIRTARNILQSDNPLQTLVILVKDNGQPSLSSTVTMNI
RVLENSTEGITESSTLMKNPEYFADPNVYLIIIFSCTSVVFLLIIVLLIGIKCKQDRSII
QGYNTPNYCYNRGDLHGTLNGRPIMEETLRYPGTGRVVRVPEPHQYSVCLSPESAKSDFL
FLKPCGAPTSQA
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacaaaaaccaaaaaacgaggtttgcctgcaatgtgtttgcgtgtatgttactg
gtatgtgcaccggatctaattaccgggcaacttcgttattctattcgcgaagaaatggca
gaaggcgcttatgttggaaatatcgctctagatctgggtctgaacgtacggcaattgtcg
gctcgcaagttacgactaagctctgatgacggaggacggtacatgaaggttggttcagac
aatggggtattatctattcatgaaagaatcgacagggaacgtatttgtaggcatgcagat
atgtgtaccatgtattttaaaacaatactggaaaatcctttggaggtgtaccgcggggaa
gtagagattctcgatatcaatgataatcctccgaatttcggagacggaagcatcgccttg
cagatatctgaagcgattgcacccggagtacgtttccgtcttgagagcgcggaagatccc
gatattggaataaataccgtcaccgcctacacaatcagttccaatgagcactttagtcta
aaaacgcatacaacagaagatggtattatggtagccgagttactgttagagaaatattta
gaccgagaagtccaatcatcatatcaactcttgcttgcagcggttgacggtgggatccct
cagagatcagccacagctcgggttctcattactgtagtggacattaatgataatccacca
gtgttcgatcatgatatttacaggagcagcttaagtgagaacgctcggcaaggtgccatt
gtgatgaaagtcaatgcaaatgacgcggacgaaggaatgaatgcggagctaacgtacact
tttagtgatgttgctttgcgaagagcgcgtaatttgttcagtttagacccagatagtggg
gagatccgtgtagaaggaccgctggattttgaagaagcaactagctattctctagatatt
caagctgtagaccacggttcacctgcaattactggacacgcaaatgtgctgatcaaagtc
attgacgtgaacgataacgcacccgagattaaggtgacatcagcttccaacaaaattccg
gaaaatgctccactaggaacactcataacgttcattgatattattgaccgtgattctgga
gagaacggccaattccactgcgagataccgaagaacgtcccatttagaatacaagcagca
tcgaaattggttaccagtgaaacgttggaccgtgaggtgatttctgaatatatattagta
attacggcatgggacttggggtcgccttcactgacatctaataaaactatccgaattgct
atcaccgatgtaaacgacaacgccccgcggtttgctgcatcctcctacaatgtctatgtg
atggagaataacgctccgggtgcatcaattttcgcattaactgcactagatgatgatcag
gagcagaacggctatatttcttactcttttgtgaacaatcacatccaaaacctgccggta
tcctcttacctgaccatcaaccccgtaaatggaacgatttacgcgctgcgttcctttgat
tatgagaatttcaaaaacttccagatcaaagtacaagcccgtgacgccggggtgcctcca
ttaagcagcagcgccacagtgaatgtgatcatcctggatcaaaatgacaacgcgccggta
attgtttcaccttcagaagagagtggatcagcagcagcggaggtcgtgccccggtcagcg
cgtcaaggttacttggtcaccacaataatggcaaccgatgcagattctggtcagaattcg
cggctcttttaccagatgacgaaatctaccgatgccactttgttcaacgttgggcaaaat
tccggcgaaatcagaacagcacggaatattttgcagtccgataatcctttacaaactctg
gtcatcttggtgaaggacaatgggcagccaagcctgtccagtacagttacaatgaacata
agagttttggagaacagtactgaaggaatcaccgaaagcagcaccttgatgaaaaatcca
gaatatttcgctgatccaaatgtttacttaatcatcatattcagttgcacttccgttgtc
tttcttctgatcatcgttctgttgattggcatcaagtgtaaacaggacagaagcattatc
caagggtacaacacccccaattattgttacaatcgtggagacttgcacggcacgcttaat
ggaagacctatcatggaggaaactttacgctatcccgggacgggccgggtggtccgcgtg
ccggaaccgcatcaatattcggtctgcctgtctccagagtcagcgaaaagtgatttcctc
ttcttgaagccatgcggcgctcccacgtctcaggcctaa
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