Leucoraja erinaceus (little skate): 129701866
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Entry
129701866 CDS
T09122
Name
(RefSeq) protocadherin-18-like
KO
K16499
protocadherin delta 2
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
leri04515
]
129701866
Cell adhesion molecules [BR:
leri04515
]
Cadherins
Protocadherins
129701866
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
AMA-1
Psg1
TMEM154
Motif
Other DBs
NCBI-GeneID:
129701866
NCBI-ProteinID:
XP_055499333
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Position
1:complement(131279742..131287133)
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AA seq
1123 aa
AA seq
DB search
MEKKSAGCRSVWLLAALLSWTCREAAGIAVRYQVYEEQPVGTVIGRLSETLADQLNPSSK
QFRVMQRDNSSLLSVREEDGLVSIAERLDREQLCKPTTPCTISFDVITLPTEHLQLLQVE
VLVLDINDNSPHFPRSVIPVEIFESASVGARFPLDSAVDPDVGNNSLYTYSLTPNEHFAL
EVRTRTDGAKYADLMVIRELDRERQGSYELRLTAFDRGVPPKSGSSLVKVNIADSNDNSP
VFEQSTYTIELPENSPQGSLLLDLNATDPDEGSNGKVIYSFSSHVPPQVMETFYIDADTG
HLVLLKSVDYEVSQSYEIDGQAQDLGPNSIPAHCKIVIRVVDVNDNPPEIAITLMPLGND
VASVPEGAHKETLIAVVRVEDRDSGVNGQVGCRLQGHRHFKLQQTNEKNYVIQTNETLDR
EKIAQYKLKIIAEDKGTPSLTSIQYVTVQITDVNDNAPQFEKSKYELLLDENNLPGAFIT
LMTATDVDFAKNGQVTYTILESYISGSSITTYLTIEPSTGAIYALRTFDREEINTISLVV
QARDGGTPQLSNNTTVVLTILDQNDNAPTILKPALRNGTAEIPIPSDVRPNYMVTTIAAI
DYDYGINAEFTCTLLDGNQNGHFIVDPRTCDIYTNDTFVFAQGKSWDLTVAVQDKGTPRL
SAVATLKIVLTEPRKDIYHDEKSNLDDSMIIIISLGVICAVLLLIMAMFATRCNREKKDT
RSYNCRVAESTYQHHPKRPSRQIHKGDITLVHTATGTLPIRSQHRASPSASPTLSGMERG
QMCSRQTNHSRQSLNSLVTLSSNHLPENFSLELTHTSPPVEQVSQLLSMLHQGQYQPRPS
FRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSDLFVTD
NHRFHPAMKLCTDECKVLGHSDQCWMPPLSTGVSADYRSNMFIPGEDPQQPKEDDCDSSD
STEKKKSFLTFGKDSQNEDAEDLGTSSLLTEMNSVFQRLLPPQMDMYTECNGVGSGSSLE
NKKGHLALKPLPYPQGVAAWAACTHFQNPVNSVSLAPVNHVNPQPLSKWLPAMEEIPENY
EEDEFDNVLSQLAPCKRESKHELIDASELVAEINKLLQDVRQS
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaagagtgcgggatgccggagtgtttggttattggcggcgttgctcagctgg
acgtgccgggaagcggcgggcattgcggtgaggtaccaagtgtacgaggagcagccggtc
ggcacggtgatcggcagactttcggaaactttagccgaccagttaaacccttcgtccaag
cagttccgcgtgatgcagagggataactcgtcgctgctgtccgtgagggaggaggacggg
ctggtgagcatcgccgagcggctggacagggagcagctgtgcaagcccaccaccccctgc
accatcagcttcgatgtcatcaccctgcccaccgaacatctgcagctgctccaggtcgag
gtgctggtgctcgacatcaacgacaactcgcctcacttcccccgctccgtcatcccggtg
gaaatcttcgagagcgcctcggtgggagctcgctttcccctggatagcgcagtcgacccc
gacgtggggaacaactcgctctacacttactcgctcacccccaacgagcacttcgcgctg
gaagtccgcaccaggacggacggcgccaagtacgccgacctcatggtgatccgcgaactg
gacagggagcggcaggggagctacgaactgcgcctcaccgccttcgaccgaggcgtgccc
cccaaatcgggatcctccctcgttaaagtcaacatcgctgactcgaacgacaacagcccg
gtttttgaacaatccacttacaccatcgaactgcccgagaactcgccccagggctcgctg
ctccttgacctgaacgcgactgatccggacgaaggtagtaatggaaaagtaatctactcc
ttcagcagtcacgtgcccccccaggttatggagaccttctacattgacgccgacactggc
cacttggtcctccttaagtcagtagactacgaggtcagccagagctacgagatcgacggc
caagcacaagatctgggacccaactccatcccggcccattgcaagatcgtcatcagagtg
gtggatgtgaacgacaaccctccggagattgccatcaccctgatgcccttgggtaacgac
gtggcttctgtgcccgagggggcacacaaagagaccttaatcgccgtggtccgggtcgag
gatagagactcgggggtcaacgggcaggtggggtgcagattgcaaggacaccggcacttc
aaacttcaacagaccaatgagaaaaactacgtgatccagaccaacgagactctggataga
gagaaaatcgcccagtacaagctgaaaatcattgcagaagacaagggcactccaagttta
accagcatccaatatgtgaccgtccagataaccgatgtgaatgacaatgctcctcaattc
gaaaagagtaaatatgaattgttgcttgatgaaaacaacttgcctggtgcattcatcacc
ttaatgacagccaccgatgtggactttgctaagaatggccaggtcacctatacaattctg
gagtcatacatttctggaagctctatcactacctacctcactattgagccatcgactggg
gcaatttatgcacttaggacctttgaccgtgaagagatcaacacaatttcattggtagtc
caggccagggatggaggcacccctcaactcagcaacaacaccaccgtcgttttgactatt
cttgatcaaaatgataatgcaccgactattttaaagcctgctctgcgcaatggaacagca
gagattccaattcctagtgatgttaggcccaattatatggtgaccaccattgcagcaatt
gattatgactatggcatcaatgcagaatttacctgtacactccttgatggtaatcaaaat
ggacatttcattgtggatccaagaacttgtgacatttacacaaatgatactttcgttttt
gctcaagggaaaagctgggaccttactgtggctgtgcaagataaaggaactccacgactc
agtgcagtggctaccttgaaaatcgtgttgaccgaaccaagaaaagatatttaccatgat
gaaaaaagtaatttagatgactccatgatcatcattatatcattgggtgtaatctgtgct
gttttgctcctcatcatggctatgtttgccacaagatgcaatcgggagaaaaaggacacc
agatcttataactgtcgagtagcagaatccacctatcaacatcatcctaaaagaccatca
aggcagattcacaaaggagacattactctggtgcacactgctacaggcactctgcccatc
agatcccaacatagggcttctccttccgcctcaccgaccctttcaggaatggagcggggt
cagatgtgcagcagacaaactaatcatagccggcaatctctcaacagtttggtgacctta
tcctccaaccatttgcctgagaacttttcgctggagctcacacatacctccccaccagtt
gagcaagtttcccagcttttgagcatgctgcatcaaggtcaatatcagccaagaccaagt
ttccgtggaaacaaatattctagaagctacagatatgctctgcaagatatggacaaattc
agtctgaaagacagtggtagaggtgacagtgaagctggtgacagtgattatgatttggga
agggattctcccattgacagacttctgggtgaaggcttcagtgatctttttgtgactgac
aaccatcgatttcatccagcaatgaagctgtgcacagatgaatgcaaagtactgggacat
tctgatcaatgctggatgcctcccttgtctacaggggtttctgctgattacagaagcaac
atgtttattcctggtgaggatccacagcagccaaaggaagatgattgtgactcttcagat
tccactgagaagaaaaaaagctttttgacctttggcaaagactcccagaatgaagacgca
gaggacctgggaacctcctctctcctaactgaaatgaacagtgttttccaacgactactg
cctccacagatggacatgtacacagaatgcaatggggttggcagtggaagctctttggaa
aataaaaaaggacacttggcattaaagccacttccctacccacaaggggtagcagcttgg
gcggcatgcactcatttccagaatccagtgaacagtgttagtcttgctcctgtaaatcat
gtaaacccacaacctctttctaagtggttgcctgccatggaggaaatcccagagaattac
gaagaagatgaatttgataatgttctcagccagcttgctccttgtaagcgtgagagtaaa
catgaactaattgatgccagtgaacttgtggcagaaattaacaaacttttacaagatgtt
cgtcaaagctaa
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