KEGG   Leucoraja erinaceus (little skate): 129702066
Entry
129702066         CDS       T09122                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03420  Nucleotide excision repair
leri04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    129702066 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    129702066 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:leri04121]
    129702066 (cul4b)
   03400 DNA repair and recombination proteins [BR:leri03400]
    129702066 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:leri04147]
    129702066 (cul4b)
Ubiquitin system [BR:leri04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     129702066 (cul4b)
DNA repair and recombination proteins [BR:leri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      129702066 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      129702066 (cul4b)
Exosome [BR:leri04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   129702066 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 129702066
NCBI-ProteinID: XP_055499574
LinkDB
Position
12:13156028..13205905
AA seq 855 aa
MFRTGLSSQNSPQEVRQQADVSPRKRKLAQAAEFEHQHQATQQTQLQVFSTAPKSSSSSS
SSTTTSTSTSSSSTSSTCCNHQLHKRVKFEDSLDFVGLDVMMAEEQRKSSGCSVLTGHAN
GLTKSTTFATSKPGTAKKLVIKNFKDKPKLPDNYTNETWQKLKEAVEAIQKSTSIKYNLE
ELYQAVENLCSYKVSANLYKQLRQVCEDHIKAQIHQFREDSLDSVLFLKKIDKCWQDHCR
QMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRSHVISDRKVQNKTIDGILLLIERER
NGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYATEGQRLMQEREVPEYLHHVN
KRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLPAILQKGLNSLLDENRIQDLSLLYQ
LFSRVRGGVQVLLQHWIEYIKTFGSTIVINPEKDKTMVQELLDFKDKVDHVVDVCFLKNE
KFVNAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIY
GKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFRDMELSKDI
MIQFKQYMQNQNIPGNLELTVNILTMGYWPTYVPMEVHLPLEMVKLQEIFKTFYLGKHSG
RKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKTATGIEDGEL
RRTLQSLACGKARVLTKTPKSKDIEDCDKFTCNDDFKHKLFRIKINQIQMKETIEEQAST
TERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDY
MERDKENTNQYNYVA
NT seq 2568 nt   +upstreamnt  +downstreamnt
atgtttcgaacgggcctctcttcacaaaattcaccgcaggaggtgcgacaacaggctgat
gttagtccgaggaagcgaaagttagcacaggccgccgagtttgagcaccagcatcaggca
acacagcaaacccaactccaagtcttctccacagcccccaagtcgtcgtcctcctcctcc
tcctccaccaccacctccacctccacctcctcgtcctccacctcctccacctgctgcaac
caccagctccacaagagagtcaagttcgaggattcgttggactttgtgggactcgatgta
atgatggcggaggagcagaggaaaagcagcggctgctcagtgctaacggggcatgccaac
ggtctgacaaagtccaccaccttcgccaccagcaagccgggaacggctaaaaaactagtt
attaaaaatttcaaagataaacctaaactgcctgataattacactaatgaaacttggcaa
aaattgaaagaagcagtggaagcaattcagaagagcacctcaatcaaatacaatttagag
gaactttatcaggctgtggagaacctttgttcttacaaagtatcagcaaatttatacaag
cagctgagacaagtctgtgaggaccacatcaaagctcaaattcaccagttcagagaggat
tccttggatagtgttctctttttaaagaaaatagataaatgctggcaggatcactgcaga
caaatgatcatgattaggagtattttcttgtttctggatagaacatacgttttacaaaat
tcaatgctaccgtctatttgggacatgggcctagaattatttagatcccatgtaataagt
gatcggaaggttcaaaataaaactattgatgggattcttctgttaattgaaagagaacga
aatggtgaagctattgatcggagtttgcttcgaagtctcttgagtatgctatcagatttg
cagatatatcaggattcatttgaacaaaggtttttggaagagactaatcgtctgtatgct
acagaaggtcaaagactgatgcaagaacgagaggttccagaatacttacaccatgttaat
aaacgtttggaggaagaagcagatcgtgttatcacttatttagatcagagcacacagaag
cctctaatagctactgtggagaaacaactcttaggtgaacatttaccggccattcttcag
aaaggtttaaacagccttctggatgaaaacagaatacaagatctctctctcctttaccaa
ctttttagtcgagttcgaggtggagtacaggttctattgcaacattggattgaatatata
aagacttttggcagtactatagtaattaatccagaaaaagataaaacaatggttcaagaa
ctacttgatttcaaggacaaagtggatcacgtggttgatgtatgcttcctgaagaatgaa
aaatttgtcaacgcaatgaaagaagcctttgaaaccttcattaacaaacgaccaaacaaa
ccagctgaacttatagctaaatatgtggattcaaagctccgagctgggaacaaagaggct
actgatgaagagcttgagaagatgctggataagattatgataatatttagatttatttat
ggaaaagacgtatttgaggcattttacaagaaggacttggcaaagagactattggtggga
aagagtgcatcagtggatgcagaaaaatcaatgttgtccaaattgaaacatgaatgtggc
gctgcattcaccagcaaattggaaggaatgttcagagacatggagctctcaaaagatatt
atgatccaatttaaacagtacatgcaaaatcagaacatacctgggaatcttgaattgact
gtaaacatcctcacaatgggctactggccaacctatgtgcccatggaagttcatttaccc
ctagagatggtgaaacttcaggagattttcaagaccttttatctgggtaagcacagtggt
aggaagttacagtggcagtcaacattgggtcattgcgtactgaaagcagaatttaaagag
ggtaagaaagagcttcaagtgtcacttttccaaactctggtactactaatgtttaatgaa
ggggaagagttcagtttggaggaaattaaaacagcaactggaatagaggatggagagtta
cgaagaacattacagtcattggcatgtggcaaagcacgtgtactgaccaagactccaaaa
agcaaagacatagaagactgtgataaattcacctgtaatgatgatttcaaacataagttg
ttcaggatcaagattaaccagatccagatgaaagaaacgattgaagaacaggccagcact
actgagagagtgttccaagataggcagtatcaaatagatgctgctattgttcgaatcatg
aaaatgagaaaaactttgagccacaatcttcttgtatctgaagtatataaccagctgaaa
tttccagtcaagcctgctgatctaaagaaaagaatcgaatctttaattgacagggactac
atggagagagacaaagaaaataccaaccaatacaactatgtggcgtaa

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