Leucoraja erinacea (little skate): 129702333
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Entry
129702333 CDS
T09122
Symbol
tfdp1a
Name
(RefSeq) transcription factor Dp-1a isoform X1
KO
K04683
transcription factor Dp-1
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03083
Polycomb repressive complex
leri04110
Cell cycle
leri04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
129702333 (tfdp1a)
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
129702333 (tfdp1a)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
129702333 (tfdp1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
leri03000
]
129702333 (tfdp1a)
03036 Chromosome and associated proteins [BR:
leri03036
]
129702333 (tfdp1a)
Transcription factors [BR:
leri03000
]
Eukaryotic type
Helix-turn-helix
Fork head/winged helix cell cycle-controlling factors, DP
129702333 (tfdp1a)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
129702333 (tfdp1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DP
E2F_TDP
Motif
Other DBs
NCBI-GeneID:
129702333
NCBI-ProteinID:
XP_055500054
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All DBs
Position
12:complement(46962839..47018879)
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AA seq
423 aa
AA seq
DB search
MAKDIGVRETNGEIKVFTDQNVSPAKIALVTVASSHLITPGKQILPKTLGLSNVSNAPQM
IISTPQRTPTTPTLLLSSPHGPNVHMITQGETSDSSPWSTGKRSKKGEKNGKGLRHFSMK
VCEKVQQKGTTTYNEVADELVAEFSNTNNHESGSDEQGYDQKNIRRRVYDALNVLMAMNI
ISKEKKEIKWIGLPTNSAQECQNLEMEKRRKMEMIKQKQLQLKELLLQQIAFKNLVQRNR
LVEQQSGRVPPPNTAIRLPFILVNTSKKTIIDCSISPDKFEYFFNFDNTFEIHDDIEILK
RMRMAFGLESGGCSAEELKMAKSLVPQVLEPYVIEMAKGVQNVSSGPSSVAASASSSSFQ
SSRAFGASDAIQALPTDTEVALATSQAQGSLNGTHVPDPRMETPMSYIGDDDDEDDDDDE
EYE
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagatattggggtaagagaaactaatggcgagatcaaagtttttacagatcag
aatgttagtccagcaaaaattgcattagtgacagtagcatcttcgcatctcataacccca
gggaaacaaattttgccaaaaacattggggctatcaaatgttagtaatgctcctcagatg
ataatcagtactcctcaacggacaccaacaacacctactctattattgagtagccctcat
ggtcctaatgtgcacatgataactcagggtgagacatcggactcttctccgtggagtaca
ggtaaaaggagcaaaaagggtgaaaaaaatggcaaaggattgcggcatttctcaatgaag
gtttgcgagaaagtgcagcagaaaggaacaactacctacaatgaagtggcagatgagctg
gtggcagagttcagtaatacaaacaaccacgaatcgggctctgatgaacagggatatgat
caaaaaaatataaggcgtcgtgtgtatgatgcgctgaacgtgctcatggcaatgaacatc
atttctaaagagaagaaagaaatcaagtggataggacttcccactaactcagctcaagag
tgccagaatctagagatggagaagcggaggaaaatggagatgattaagcaaaagcagtta
caacttaaggagttgcttctgcagcaaattgcctttaagaatctggttcaacgaaatcgc
cttgtagaacaacaatctggcagagttcctcctcccaatactgccattcgactgcccttc
attttagtcaacaccagcaaaaaaacaatcatagactgcagtatctctcctgataagttt
gaatatttttttaactttgataatacattcgaaatccatgacgacattgaaattcttaag
cgaatgcgaatggcttttggattggagtctggtggctgttctgctgaggaactgaagatg
gcgaagagcttagtaccccaagtcctggaaccatacgtaatagaaatggctaaaggagtg
caaaatgtcagctcaggcccaagttcagtagcagcatctgcatcttcgtcaagcttccaa
tctagcagagcatttggtgccagtgatgcaatacaagccttaccaactgataccgaagtg
gccttagcgactagtcaagcacaaggaagtttaaatggtacacacgttcctgatcccaga
atggagactcctatgtcgtatattggtgatgatgatgatgaagatgatgatgatgatgag
gagtatgaatga
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