Leucoraja erinaceus (little skate): 129702371
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Entry
129702371 CDS
T09122
Symbol
atrx
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional regulator ATRX
KO
K10779
transcriptional regulator ATRX
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
129702371 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
leri03000
]
129702371 (atrx)
03036 Chromosome and associated proteins [BR:
leri03036
]
129702371 (atrx)
Transcription factors [BR:
leri03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
129702371 (atrx)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
129702371 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
129702371
NCBI-ProteinID:
XP_055500116
LinkDB
All DBs
Position
12:complement(52700279..52925336)
Genome browser
AA seq
2491 aa
AA seq
DB search
MTAEPRSESKLKTLVQKLHEYLAQSTEQAEETLSSPDLCVNQFSDRGNTAPISISTQMEH
KEVSHRKSKSSGSSHSRRKPSFVTKHIVSDDETSNETASGCEKLTSNIEDTDNLDVNCLP
KGTVVVQPEPVCDEDKDNFRGPEFRTKNPKNKMETTKKRGDENLHGIVSCTACGQQVNHF
HKDSVQRHPALKVVICKSCHKYYMSDDISKDADNMDEQCRWCAEGGNLICCDFCHNAFCK
SCILRNLGRKELSNIMDENKKWYCYVCNPAPLLDLVTACDSVFECLDQLWQQNRKKKDFE
KFKFDTGKCKSPGLHDSDRSVDQDYKRTPRNSSKDCNGQEKDISSLKTLSSGSGGITYSY
KALKVPKDILKKARKLIDTTANLNISFVNFLKQKELGDSVSSVSMRQLKAFKSVLGDLKK
VHLALEEVVDTEIQDLEMEQKKSESLQDSVSKDDAQMSTKSENYLLPNKPIAENSVLAAD
TSDQMEVSLVSSEHDKTEDENIIPVGKTDTLMLNPAIDGVENDCSLSEFKNAADAADEST
SLGLESEMVDETLLNSLDEAFHMGCASSPTGDLSAVSDPLLPDLETVNNSASDSIMLDAV
LPKATIKSDNNLQKSSEFDTSSSPVKHELSTNLTPVSLKRSKKTTKGIRKKKLPKRSKQK
VPESVAEAAADSDEAKAVGNSDDAAESAGDGSAAESAGNGDGGVESAGDGDGGVESAGDG
DDGAESAGDGDGEAESAEEGDGEAGAAGDGDGIVETIPDVDGIAKTVRDVDDTAKAAGDG
DGIAETVRDVDGTAEAAGDGDGIAETVWDEDSAVEAAGDDGSDAEAMRDHSDAGFPDNES
GKDVALESMDDENHDAGDDSNGDTVDNVSGADDLIKNKKLVTRSQKGSANFSKKRKKKSK
DESGNDTANDATIDASVLSDTDTKRSPRVKTTPLRRPAGTGIVNSRSEEDTESGGGKKRR
KSKSKPKDNEKINSSAKAKAVRSKTSNKNVKSDSDKSDASHKVGVQITSDSDEIPEVLRK
AAVKRDSSSDADNKNSDSSQKIIKKASLFGLRKRMPRVNNTDTVKRKRKCSSSSSDFSGK
PRKRTSKRINVANKKRRHNSDSSNYDSDLEKEIKNLSKISAAKKSTSKKSKKQATQDDGD
DSSKDNEKVATKSAQEKTKLKRKKKTKERKQTSSSSSDDDEAAEQADKHDLPGEGSIDEQ
KIQPIMENIVLATGSGFCQSSGDEGEGNSKNVTQCASDDCDDDPENRIAKKMLLAEISAN
LSSNNDKSSDEESEDEKKKSGQRNEQEDEEENDEDEEAEDDSGSDSEFEMTKKPRYRHRL
LRHKLTMSDGESGNEKEAKVKDGTKEGTRKSRRKVSSNEETTEQESDSDFSESQSSEEES
ESDDKQKRPRTRASKKEAEESHRSYLQKKKRRRIKVQENSSSEKSNSESGSNSDSDKSDD
DLASPGKGRKKIRKILKDGNLRTETLNALKVEEDRRKRIADREKEREKLREQMEVLEGLS
PAHCSITTKLVLEEDKETKECLVQVHRNLVRKLKPHQVDGVQFMWDCCCESMSKTVKETG
SGCILAHCMGLGKTLQVVTFLHTMLLSEKIEFTTALIVCPLNTVLNWINEFSKWQEGLDD
DECLEVTELATVKRPQERSYLLERWMEDGGVMVLGYEMYRNLAQGRNVKSRKMKEIFQKT
LVDPGPDFVVCDEGHILKNEASAISKAMNSIRTRRRIILTGTPLQNNLVEYHCMVNFIKE
NLLGSIKEFRNRFMNPIQNGQCADSTLVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFL
LPKYEYVLAVRMMPIQCKLYQYYLDHFTGAPQLTIGLCSAKPIVNRKYRVGTSAEGGRGR
TGTRLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMDEFIASDSDETSMSLSSEEE
KSKKKKRGKKNGSSSKESGSDNEVEVIKVWNSRSRGGGEGSTEDKIAEPTVAKIEEVIAV
KPPAGTNPGSPAADWYKEFITDADAEILTHSGKMAILFEILHMSEAIGEKVLVFSQSLIS
LDLIEDFLEMANREKSDDKTNVYKGEGKWYRNIDYYRMDGSTSAQTRKKWAEEFNDETNV
RGRLFIISTKAGSLGINLVASNRVIIFDASWNPSYDIQSIFRVYRFGQLKPVFVYRFLAQ
GTMEEKIYDRQVTKQSLSFRVVDQQQIERHFTMNELTELYTFEPDQLDDLNTEKKKKRDT
PMLPKDHILAEILKNQKDYLVGYHEHDSLLDHKEEEELSEADRKAAWAEYEAEKKGISLR
TNVATGINFPGANFTLQATHFPFNVATLSAMSNQQLEDLINQGREKVVEASTSIAGVRAE
ALEDLIAQVWKENPSLTEDQVQAVSLTKQVTQELEIKRREAMYNDILSKQQLLIRSVQQI
LMSRRQHQINQMAQQQPYPMSPLLNQFMAARNAGPMLSYPHIDLRGLPMYSQTASGMRPP
PLQRAPPIPMQMKGQSPGPPQLKQGVQNSKN
NT seq
7476 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagagccgcggagtgaaagcaaactgaaaacattagtgcagaagctacacgaa
tatcttgctcaatcaacagaacaagctgaagagaccctgtcctctccagacctatgtgta
aatcaattttcagatagagggaacacagctcccatttcaatttcaactcagatggagcat
aaagaggtctcccaccgaaaatcaaagtcttcgggatcatcccactcaagaaggaaaccc
tcatttgtgacaaagcacattgtgtcagatgatgaaacatcaaatgagactgcttctggc
tgcgagaaactgacttcaaatattgaggacacggataatttagatgtgaattgtctgcct
aaaggcacggtagttgtacagcctgaacctgtatgtgatgaagataaagataactttcga
ggacctgaatttagaaccaaaaatcctaagaacaaaatggaaacaacaaagaaacgtgga
gatgagaatctgcatggaatagtcagttgcactgcttgtgggcagcaggtaaaccatttt
cacaaggattcagttcagcggcatcctgcattgaaagttgtcatatgtaagagctgccat
aagtactacatgagtgatgacattagcaaagatgctgataatatggatgaacagtgcaga
tggtgtgctgaaggtggaaatctgatttgttgtgatttttgtcacaatgcattttgcaaa
agctgcatattgcgcaacctgggtagaaaggaactatcaaatattatggatgaaaacaaa
aagtggtactgctacgtgtgtaatccagcgcctttactggatttggtcacagcttgtgat
agtgtatttgagtgccttgatcagctttggcaacaaaacagaaagaagaaagactttgaa
aagtttaaatttgacactggaaaatgcaagtctccaggccttcatgacagtgatagatct
gtagatcaggattataaaagaactccaagaaattccagtaaagattgtaatggacaggaa
aaggatataagttcgttgaagaccctttcttcgggatctggaggtattacatattcttac
aaggcattgaaagtgccaaaagacattctgaagaaggctcgcaaactaattgatacgaca
gctaacttgaatattagcttcgtaaattttttaaaacaaaaggagttgggtgattctgta
tctagtgtaagcatgagacagttgaaagcatttaagtctgtgctcggtgatctaaagaaa
gtgcatcttgcattggaagaagttgtagatacagagattcaagacttagaaatggaacaa
aaaaaatctgaatccttacaagattctgttagcaaagatgacgcacaaatgtcaactaaa
agtgagaattatttattaccaaataagccaattgcggaaaattcggttttagcagcagac
acatctgatcaaatggaagtgtctttggtttcgagtgaacatgacaagactgaagatgaa
aatatcatacctgtaggaaaaactgatacgttaatgcttaatccagcaatagacggtgtt
gaaaatgactgttcattaagtgagttcaaaaatgcagctgatgctgcagatgaaagtaca
agcctgggcctagaatcagaaatggtagatgaaactttgcttaacagtttagatgaggct
tttcatatgggatgtgcttcttcacctactggagatttgtctgcggtttctgacccattg
ttaccagatttggaaacagtgaataattctgcaagtgacagcataatgcttgatgctgtg
ttgcctaaggcaactattaaaagtgacaataacttgcaaaaatcatcagagtttgacact
agttctagtccagtgaagcatgaactttcaacaaatttgaccccagtttcattgaagagg
agtaaaaaaacaacaaaaggtatacgtaagaaaaaattgccaaagaggagcaaacaaaag
gtgcccgaatctgtggctgaggctgcagcggacagtgatgaagccaaggctgtggggaac
agtgatgatgcagcagagtctgctggggatggtagtgcagctgagtccgctgggaatgga
gatggtggagtcgagtctgctggggatggagacggtggagtcgagtctgctggggatgga
gatgatggagccgagtctgctggggatggagatggtgaagctgagtctgctgaggaagga
gatggtgaagctggggctgcaggagatggggatggtatagttgagactataccggatgta
gatggtatagctaagactgtacgggatgtagatgatacagctaaggctgcaggagatggg
gatggtatagctgagactgtacgagatgtagatggtacagctgaggctgcaggtgacgga
gatggtattgctgagactgtatgggatgaagatagtgcagttgaggctgcaggggatgat
gggagtgacgctgaagcaatgagggatcacagtgatgctggctttccagataatgagagt
ggtaaggatgttgcattagaatcaatggatgatgaaaaccacgatgctggggacgacagc
aatggtgatactgtggacaatgtcagtggtgcagatgatttgattaaaaacaaaaagctt
gtcactagatctcaaaagggcagtgcaaatttttcaaaaaaaagaaagaaaaaatctaag
gatgaaagtggaaatgatactgcaaatgatgctacaattgatgcttcggttctatcagac
actgatacaaagcggtcacctcgcgtaaagactacacccttgagacgccctgcagggaca
gggattgttaactccagatctgaggaagacactgaaagtggtggtggcaaaaaaagaagg
aaatcaaaaagtaaacccaaggacaatgaaaaaattaattcttcagcaaaagccaaggct
gtccgatcaaaaacatctaataaaaatgtcaagtctgattctgataaatcagatgcatct
cataaagttggtgtgcaaattacctctgactctgatgaaataccagaagtacttagaaag
gcagcagtgaagcgtgatagttcatctgatgcagataacaaaaacagtgattcatcacag
aaaattattaaaaaggctagtttgtttggtttgagaaagcgcatgccacgagtaaataac
acggataccgttaaacgaaagaggaagtgttcatcctccagctcagatttcagtggaaag
ccaagaaaaagaactagtaaaagaattaatgttgccaataaaaaaagacgacataattct
gactcctccaactatgattctgacctagaaaaagaaataaagaacttgagtaaaatcagt
gcagcaaaaaaatcaacttcaaagaaatccaaaaagcaagcaacacaggatgatggggat
gattcatccaaagataatgagaaagttgcaacaaagtctgctcaagaaaagacaaaatta
aaacgcaagaaaaaaactaaggaaagaaagcagacctcttcatcctcgtcagatgacgat
gaagctgctgaacaagcagacaagcatgatcttcctggagaaggaagcattgacgaacaa
aagatacaacctatcatggaaaacattgtgcttgctactggatctggattttgccagtca
tcaggtgatgaaggagaaggcaattcaaaaaatgtcacccagtgtgccagtgatgactgt
gatgatgatcctgagaatagaattgccaagaaaatgctgttagcggaaataagtgcaaat
ctatcatccaacaatgataaatcttcagacgaggaatctgaagatgaaaagaagaaatct
ggccagagaaatgaacaagaagatgaagaagaaaatgatgaagacgaggaagctgaagac
gactctggttcagactctgagtttgaaatgacaaagaagccacgttacaggcatcgactt
ttgaggcataaactcacaatgagtgatggtgaatctggaaatgaaaaagaagcgaaagtc
aaagatggaacaaaggaaggcacacgcaagagcagaaggaaagtaagtagtaacgaagaa
actaccgaacaggagagtgactctgacttctctgaatctcaatctagtgaagaggaaagt
gaatctgatgataaacagaaacgtccaaggacaagagcatctaaaaaagaggcagaggaa
agccatcgcagctatttgcagaaaaagaaaagaaggcgaattaaagttcaggaaaactca
tcaagtgaaaagagcaactcagagagtggaagtaatagtgatagtgataagagcgatgat
gatttagcatctcctggaaaaggtcggaagaagataaggaagattttgaaagatggcaat
ttgcgaacagaaactctaaatgccttaaaagtcgaggaagatagaagaaaacgaattgct
gacagagaaaaggagagggaaaagttgagagagcagatggaagtattggaaggtttatca
cctgcacattgttcaataaccactaaactggtccttgaggaagataaagagacaaaggaa
tgtctcgtccaagtccatcgaaatttggtacgaaaattgaaaccccatcaagtagatggt
gtgcagttcatgtgggattgttgctgtgagtcgatgagcaaaaccgtgaaagagacgggc
tcaggctgcatattggcacattgcatgggacttggaaagacactgcaggtagtgactttt
ttgcacaccatgctgttgtctgagaaaattgaattcactactgctttaattgtttgccca
ctaaacactgttcttaattggatcaatgaattttcaaaatggcaggaaggactggacgat
gatgaatgcttagaggtaactgaattggcgacagttaaacgccctcaggagagatcctac
cttcttgaaagatggatggaggatggcggtgtcatggttttaggttatgaaatgtatcgt
aatcttgcacaaggcagaaatgtgaaaagtaggaagatgaaagaaatattccagaagact
ttagtcgaccctggaccagactttgttgtctgtgatgaaggccatatacttaaaaatgaa
gcttcggcaatatcaaaggcaatgaattctatcagaacaagaaggaggattattctaaca
gggacaccattacaaaacaatcttgttgaatatcattgtatggtgaatttcattaaggag
aatcttcttggctcaataaaagaattcagaaacagatttatgaatccgattcagaatggg
caatgtgcagactccactttagtggatgtaagagtaatgaagaaacgtgcccacatattg
tatgagatgttagcaggttgtgtgcagcgcaaagactacactgcacttacaaaattcttg
cttccaaaatatgagtatgttcttgctgtgagaatgatgccaattcagtgcaaactttat
cagtactaccttgatcattttacaggtgctcctcaacttacgattgggttatgttccgcc
aaacccatcgtaaatcgaaaatatcgtgtaggaactagtgctgaaggtggaaggggtaga
actggaaccagactctttcaagattttcaaatgttgagtaggatatggacccatccttgg
tgtttgcagttggattacatcagtaaagaaaacaagggatactttgatgaggacagtatg
gatgaattcattgcatcagactctgatgagacttcaatgagtctttcctcagaagaagag
aaaagtaagaaaaaaaagcgtggaaagaaaaatggaagcagctctaaggaaagtggcagt
gataatgaagtagaagtgataaaagtctggaattcaagatcacgtggtggaggggaagga
agtacagaagataaaattgcagaacctactgttgcaaaaatcgaagaggtcattgcagtg
aagcctcccgctggtactaatccaggaagtcctgctgctgactggtacaaagaattcatt
actgatgctgatgcagaaatacttacccattcagggaaaatggccatcttgtttgaaatt
ctacacatgtcagaagcaattggagaaaaagtacttgtcttcagccaatcactgatatca
ttggatttgatagaagactttctggagatggcaaatagagaaaagtcagatgacaagact
aatgtttataaaggtgaagggaaatggtacagaaacatagattactatcgaatggatgga
tccacaagtgcacaaacaagaaaaaaatgggcagaagagttcaacgatgaaacaaatgtc
aggggtcgtctattcatcatttccacaaaagctggatctctggggattaatcttgtggct
tccaaccgtgtcatcatttttgatgcctcctggaatccttcatatgacatccagagcatc
tttcgagtttatcgttttggacagttaaagccagtctttgtgtacagattcttggctcag
ggaaccatggaggaaaagatttatgatcgacaagtaacaaaacagtcactttcattccgc
gtggtcgaccagcaacagattgagcgtcacttcacaatgaatgaactaactgaactctac
acttttgagccagatcagctggatgatctaaacactgaaaagaagaagaaaagagatact
ccaatgctgccaaaggatcatattttagcagaaatacttaaaaaccagaaagattacctt
gttggttaccatgaacatgactcgcttttagaccataaggaggaagaagagctatctgag
gcggaccgtaaagcagcatgggctgaatatgaagcagaaaagaagggtatctccttgcga
actaatgttgcgactgggattaatttccctggtgccaatttcaccttgcaggctacacat
tttcctttcaacgtagcaactttgtcggcaatgagtaatcaacagctggaggatcttata
aaccaaggcagagagaaagtagtcgaagcaagtacaagcatagcaggtgtgagagcagag
gctcttgaagacctaattgcacaagtgtggaaagagaatcccagcctgactgaagaccag
gttcaagcagtatcactcaccaaacaagtaacccaagagttggaaattaaacgaagagaa
gctatgtacaatgatatcctttcaaaacagcagctgctgatccgttcagtacagcaaata
ttaatgagccgaaggcagcatcagattaaccagatggcacaacagcaaccgtacccgatg
tcgccacttttaaaccaatttatggctgcaagaaatgctggcccaatgcttagttatcca
cacatcgacctaagaggactgcctatgtattcacaaactgcatctggtatgcggccacct
cctttgcagagggcaccacctatacccatgcagatgaagggacagtctcctggcccccca
caactgaaacaaggagtacaaaattcaaaaaattag
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integrated database retrieval system
