Leucoraja erinaceus (little skate): 129702538
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Entry
129702538 CDS
T09122
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
leri04131
]
129702538
Membrane trafficking [BR:
leri04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
129702538
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
129702538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
EIF3I
Lgl_C
Beta-prop_WDR19_1st
KNTC1_N
Synaptobrevin
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_EML
Beta-prop_NUP159_NUP214
WD40_like
Motif
Other DBs
NCBI-GeneID:
129702538
NCBI-ProteinID:
XP_055500259
LinkDB
All DBs
Position
13:3047019..3280576
Genome browser
AA seq
1219 aa
AA seq
DB search
MKKFNFRKVLDGLTAASSPAQPGGGGGGGGGGGGMGPGSGGGTAGGGRAGAGDADISETL
TSDHFQICKTVRHGFPCQPTALAYDPVQKILAIGCRTGALRILGRPGVDCYCQHDSGAAV
LHLQFLINEGALVSACADDTLHLWNLRQKRPAILHSLKFNRERITCCHLPFQSKWLYVGT
ERGNMYVVNIESFVLSGYVIMWNKAIELSTKIHPGPVVHLSDSPRDEGKLLMGFENGTVV
MWDVRSKRAEFRLYYDEAIHSISWHHEGKQFMCSHSDGSLTLWNLKNPSKPFQIIVPHGK
VQRDGKKPESCKPILKVDHKTCRNSETFIIFSGGLSYDKASRRPSLTIMHGKSITVLEMD
YPIVDFITLCETPYPNEFQDPNAVVVLLEKDLIVVDLTQNNFPLFENPYPMDVHESPVTC
SEYFADCPPDLIPALYSVGAKQQKQQGYSTKEWPIGGGTWNLGAQTYPEIIITGHADGSL
KFWDASAITLQVLYKLKTSKVFEKQKVKVGKQTAEIVEEDPYAIQMISWCPESRMFCVAG
ISAHVIVYRFSKHEVTSEILALELRLQYEVEDIVTPEPESAVPFTDASSQLSFSKTPTLS
GSANALAPEGVKDSIPCLKVKTRPVRMAPGYQADLIIQLVWIDGEPPQQITSLAVSSAYG
LVTFGNCNGLAVVDFMQKTILLSMGTIKLYGTSDPFQRHLKSPRKSKQLTAGLNELLDSP
GSLEVERCKSPTSGRVKGPRKLSLPTDLKTDLGSVKGSCFEGKSAVSKNSVKTFEKTRTI
FEDHVNGVCTSPTSQPSNTGKRLSIADTSKLNRRGPGRPPFRKVQSAACMEVSLPLTHTE
ESKENSFNRSRSSSVSSIDKESKEAITALYFMESFSRKMDSTLSPCLWLGTSLGTVLVIS
LNLPPEEQRYSEPLVVSPSGTVLMLKGAILTFASLDSLGSLIHPPYEVWKDPNSEDKDDK
ARKRKLVRFSPSSSQEMGDHQYVVLCSEKQAKLYSLPSLCCLYVHNITETSFVLRADIVT
MCNSICLACFCANGHIMTLSLPSLRPLLDVNYLPLTDMRIARTFCFTNSGQALYLSSPSE
IQRITYSQEMCENLQEMLGDLFIPIETPEAQNRGFLKGLFGGSAQTFDREELFGEASAGK
ASRALAQHIPGPGGLEGVKGAASGVVGDLARARIALDERGQRLGELEDRTAAMMSSAETF
SKHAHELMLKCRDKKWYQF
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaatttccgcaaggtgctggacgggttgacagcggcgtcgtcgccggct
cagcccggtggaggtggaggtggaggcggcggcggcggcgggatgggaccggggtctggc
ggcgggaccgcgggaggaggcagagcaggagccggggatgcagacatctccgagacactc
acctcggatcatttccagatctgcaagactgtgcgccatggcttcccctgtcaaccgacg
gccttggcttatgatccggtgcaaaaaattctggccattgggtgccgcacaggagctcta
cgaatactaggtcgtcctggagttgactgctactgccaacatgacagcggtgcagctgtg
ctgcatcttcagttcctgatcaatgagggagctttagtaagtgcgtgtgcagatgacaca
ctccatctgtggaaccttcgccaaaagcgtccagctattcttcattcactcaaattcaac
agagagcggattacctgctgccatctccctttccagagtaaatggttgtacgtgggcaca
gagcgaggaaacatgtacgttgtaaatattgagtcttttgtcttgtcgggatacgtcatc
atgtggaataaagcaatagagctgtctacaaaaattcatcctggccctgttgttcattta
agtgacagcccaagggacgaggggaaactcctcatggggtttgaaaatggaacggttgta
atgtgggatgtgaggtcaaagagggcagagtttagattatattatgatgaggctatccat
tctatcagctggcatcatgaagggaagcaatttatgtgcagccattcagatggtagttta
actctttggaacttgaaaaacccaagcaaaccctttcagataatagtaccacatggtaaa
gtccagcgagatggtaagaaacctgagtcttgcaaaccaatcctaaaagtagatcataag
acttgcagaaatagtgaaacatttattattttttctggaggtctatcctatgataaagca
tctagaagacccagtctgacaattatgcatggcaaatccattacagttttggaaatggat
tatcccattgtggacttcataactctctgtgaaacaccatatccaaatgaattccaggac
cctaatgccgtggttgtattacttgagaaagatctaatcgttgttgaccttacgcaaaac
aattttcctctctttgaaaacccgtatccaatggatgtgcatgaatctccagtgacttgc
tctgagtattttgcagattgtcctcctgatttgatacctgccctctattctgtgggagcc
aaacaacaaaaacagcagggatatagcacaaaggaatggccaatcggtggtggtacttgg
aatttgggtgcacaaacatatcctgaaatcatcataactggacatgcagatggttctttg
aaattctgggatgcttcagcaataactcttcaagtattatacaaactgaaaacgtcaaaa
gtgtttgaaaaacagaaggtgaaagttggaaagcagactgcagagattgtggaagaggat
ccctatgccatccagatgatcagttggtgtccagagagcaggatgttttgtgttgctggc
atctcagcgcatgtcattgtttatagatttagcaaacatgaagttacatccgagatattg
gctcttgagctgcgattacagtatgaagttgaagacattgttactccagaacctgaatct
gccgtgccattcactgatgcatcttctcagctctcattttcaaagactccaacattatct
ggtagtgcaaacgcattagcaccagagggagtgaaagacagcatcccatgtctcaaagtg
aaaactcgtcctgtcagaatggctcctggataccaggctgatctcatcattcaactggtg
tggattgatggggaaccacctcaacagatcaccagcctagcagttagctctgcctatggc
cttgtgacttttggaaactgtaatggtctggcagttgtggactttatgcagaagaccatt
ttacttagtatgggaacaattaaactctatggtacaagtgacccatttcaacgccacctt
aaatctccccgtaagagcaaacagctcactgcaggtttgaatgaactcttggacagtcct
ggctcactggaggttgaacgctgcaaatcacccacttcaggtagagtaaaaggaccaaga
aagttaagtctgccgacagatcttaagactgatctcggatctgtgaaaggttcctgtttt
gaagggaaatcagctgtttcaaagaactcagtgaaaacttttgagaagactagaacaata
tttgaagatcacgtcaatggagtgtgcacgagccctacctctcaacccagcaacacggga
aagcgcctttccatcgcagatacgtcaaaactgaaccgccgtggaccagggaggccaccg
tttcgcaaagtacagtcagctgcctgcatggaagtctcattgccactcacccacacagaa
gaaagtaaagaaaattcttttaatcggtcaagaagttccagtgtctccagcattgacaaa
gaatcgaaggaagccataactgctctctacttcatggagtccttcagccgaaagatggat
tcaacgctctcgccatgcctttggcttggtaccagtttgggtacagtgctagttatctca
ttgaaccttcctccagaggagcaacgatattcagagccactcgtggtttctcccagcggc
actgtgttaatgttgaaaggagccatactaacatttgcctctttggattcgctgggcagt
ttaatacaccccccatatgaggtgtggaaggatcccaacagtgaagataaagatgataaa
gcacggaaaagaaaactagtaagattttcaccatcttcctctcaggagatgggggaccac
cagtatgtagtgctctgctctgagaaacaagccaaactctattcccttccttctctgtgc
tgcttatatgtacacaatatcactgagacttcctttgtattaagagcagacatcgtaaca
atgtgcaacagcatctgcctggcttgcttctgtgctaatggacatattatgaccttaagc
ttgccaagcctcagaccattgctggatgtaaactacttgcctttaactgatatgagaata
gcccggactttctgcttcaccaacagtggacaggctctgtatctgagttcacccagcgag
atccagcgaattacctacagccaggagatgtgtgaaaatcttcaggaaatgctgggagat
ttatttattccaatcgaaactccagaggcccagaacagaggttttttgaagggattattt
ggcggaagtgcccaaacatttgacagggaagagttatttggagaggcttcagcaggcaag
gcatctcgtgcacttgcccagcacatccctggaccgggtggccttgagggtgtgaagggt
gctgcgtcaggagtagttggtgatctagcccgtgctcgtattgctttggatgagcgtgga
cagagactgggggaattggaggaccggacagctgctatgatgtccagtgcagagaccttc
tccaaacacgcacatgagttgatgctcaaatgcagagataagaagtggtatcagttctga
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