Leucoraja erinaceus (little skate): 129702743
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Entry
129702743 CDS
T09122
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
leri04990
]
129702743 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
leri04990
]
Other domain-containing proteins
Patched domain-containing proteins
129702743 (ptchd1)
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
129702743
NCBI-ProteinID:
XP_055500659
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All DBs
Position
13:28078323..28100445
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AA seq
893 aa
AA seq
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MLRQLLHRGLKTCFYRLGFFIGNHPVFFASAPVLLAILFGASFSRYRVQDNMEYLFAPRH
SLAKIERTLVNSLFPVNQSKHLLYSDLQSPGPYGRVIITAPGAGRGRGGGNLLDLQHTRL
ILQLHSSVTRIQVPMLGFNYSFAHMCILKDNKMCVLDDIVHVLEELRAAWMQNHTEIVIS
YPNTYLKDGRKVFIGHQLGGVTLQNKDRVKYARAMQITYYLQTRNSLNDLVAEKWESTFC
ETVENFQKSNKELELYPFTSSSLKEDFQKSSQVSEWYLVTSLLVVWILAMLCCSMQDCVR
NKPWLGLLGLVTMALATLTSAGIINLMGGKYNSTFLGIPFIILGHGLYGMFEMLSSWRET
MEDQHVKERIATVYAETMLPLTLTTAMYMVTFGIGASPFTNIEAVKEFCVNTCISVLFNY
LYLMAFYGSNMVFTGYLENNYQHSIFCRKVPKPDDLRGKPAWYRFIMMSKFNEEATAPGD
TSTYENHFLLWFLKQYYCDWITNTYVKPFVVLFYLIYISFALMGYLQVSEGLDLNNVVAT
ESRTVSYRIAQQRYFSSYSPVIGFYIYEPIEYWNASVQEDLQEIMEGFVRISWFETYLNY
LRKLNVTASMSRNYFLNTLRNSFLKSPQYNQFLDDIILVRKPNNELEVVASRVYLVAKTA
ENTREEIYDLLETLRKLSLTYKVKFMIFNPSFIYMDRYASSVGAPLQNSCISALFVLFFT
AFLVANSLVNIWLILTVASVEFGVIGFMTLWEVELDCISVLCLIYGVNYTIDNCAPFIST
FVLGKDLTRTKWVKNALELHGVAILQSNICYLVGIIPLTSVPSNLICTLFRCLFLIALFT
FLHCFAILPVILTFVPPSKKWAERKTPSSPEEIECMEMVDLDGTRVVDHITSV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgctgcggcagctcctgcaccggggtctgaagacgtgcttctaccgcttgggcttcttc
atcggcaaccacccggtgttcttcgcctcggcacctgtgctgctcgccatcctgttcggc
gccagcttcagccgctaccgggtgcaggacaacatggagtacctgttcgcaccgcgccac
agtctggccaagatcgagcgcaccctggtcaacagcctcttccctgtcaaccagtccaag
cacctactctattccgacctgcagagcccgggaccctacggtcgggtcatcatcaccgcc
ccgggcgcaggtagagggagaggcggcggcaacctgctcgacctgcagcacacgcggctc
atcctccagctgcattcatctgtgacacggattcaggtaccaatgttgggcttcaactac
tcatttgcccacatgtgtattctaaaggacaataagatgtgcgttctggatgatattgtg
catgtgttggaggagctcagggctgcatggatgcagaaccacacagaaatcgttatcagt
tacccaaatacctaccttaaagacggccggaaggtcttcatcggacatcagctgggagga
gttactctgcagaacaaagaccgagtgaaatatgcccgggcaatgcaaataacttattac
ctgcagactcgcaattccttgaacgacttggtagcagagaagtgggagtcgaccttctgc
gagacagtggaaaatttccagaaatccaataaagagctggagctctatccatttacatct
tcatcactgaaggaggattttcagaagagcagccaggtttcagagtggtacctggtgact
agcctgctggtggtttggattctagccatgctgtgctgttccatgcaagactgtgtacgc
aacaagccttggcttggactcttgggtttagtgacaatggctctggccaccctcacgtcg
gcagggattatcaacttaatgggagggaagtacaactctaccttcctgggaattcccttc
attattttaggccatggactgtacggcatgtttgaaatgctctcatcgtggagggagacc
atggaggaccagcatgtgaaggagaggattgccactgtgtatgctgaaaccatgctgcca
cttacgctcaccactgctatgtacatggtaacatttggcattggtgccagccccttcact
aacatagaagctgtgaaggagttctgtgttaacacatgcatttctgtactttttaactac
ctctacctgatggcattctatggctctaatatggtcttcactggttacctggaaaacaat
tatcagcacagcatcttttgcaggaaagtgccaaagccagatgatctacgaggtaaacct
gcctggtacaggtttatcatgatgtccaagtttaacgaggaggcaacagctccaggtgac
acgagcacctatgaaaatcatttcctgctttggtttctgaagcagtattattgtgattgg
attacaaatacctacgtcaaaccttttgtggttctgttttatctaatttatatctctttt
gccttaatgggctacctgcaggtcagtgaagggttagacctcaacaatgtggtggcgact
gagtctcgtacagtctcctatcgcattgcccagcagaggtatttcagcagctatagtcca
gtcattgggttttatatttatgaaccgattgagtactggaatgccagtgttcaggaggac
ttgcaggaaataatggaagggtttgttagaatatcatggtttgaaacttatttaaattac
cttagaaaactaaatgttaccgcttcaatgtccagaaactacttcctaaacacattgcgg
aattccttcctaaaatctcctcagtataaccagttcttggatgatatcatcttggtgagg
aaaccaaacaatgaactggaggtggttgcatcgcgcgtgtacctggtggctaagacagca
gaaaacaccagagaagagatttatgatctgctggaaacactgaggaagctctcgctgacg
tacaaagtgaagtttatgatttttaacccttcctttatctacatggatcgatatgcttcg
tctgtgggagcacccttgcaaaactcatgcatcagtgcgttgtttgttctcttcttcacc
gcgttcctggtggcgaactctttggtgaatatctggctgatactgactgtggcatcagtg
gagtttggggttattggtttcatgactctgtgggaagtggaactggattgcatttctgtc
ctttgcttaatctatggagtaaactacaccatcgacaactgtgcaccattcatatctaca
tttgtcttgggcaaagacctaaccaggacgaagtgggttaaaaatgctttggaactgcat
ggagtagccattttgcagagcaacatttgctacttggtcggtataatcccacttacttct
gtgccttctaatttgatctgcacactattcaggtgtctgtttctaatagcgcttttcacc
tttctccactgctttgccatactacctgtgatactgacctttgtgccgccttctaaaaag
tgggcagaaaggaaaacccccagtagccccgaggagattgagtgcatggagatggtggat
ctggatggcacgcgagtggtcgaccacatcacctcagtctga
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