KEGG   Leucoraja erinaceus (little skate): 129702764
Entry
129702764         CDS       T09122                                 
Name
(RefSeq) cullin-4A-like
  KO
K10609  cullin 4
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03420  Nucleotide excision repair
leri04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    129702764
  09124 Replication and repair
   03420 Nucleotide excision repair
    129702764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:leri04121]
    129702764
   03400 DNA repair and recombination proteins [BR:leri03400]
    129702764
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:leri04147]
    129702764
Ubiquitin system [BR:leri04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     129702764
DNA repair and recombination proteins [BR:leri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      129702764
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      129702764
Exosome [BR:leri04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   129702764
SSDB
Motif
Pfam: Cullin Cullin_AB Cullin_Nedd8 SecA_SW DUF8612
Other DBs
NCBI-GeneID: 129702764
NCBI-ProteinID: XP_055500688
LinkDB
Position
13:28815381..28871461
AA seq 823 aa
MLRPSAPCDSSPDEERRADVSGRGHPKKRVRIAEPEQAVAKAASAQLLVLAEAGQGRKRV
RPAQAQAQVEGDMADDGQRKANFSALLGHTNGLSRAGGKPAASRKLLIKNFKDKPKLPDN
YTRDTWQKLHEAVGTIQNSTSIKYNLEELYQAVENLCSYKVSATLYKQLRQVCEDHVKAQ
IQQFRDTDSLDSSLFLKKINKCWQDHCRQMIMIRSIFLFLDRTYVLQSSMLPSIWDIGLE
LFRTHIINDKTVQNKTIDGILLLIEKERNGEAVDRSLIRSLLSMLSDLQVYQESFEQRFL
EETNCLYAAEGQRLMQEREVPEYLHHVNKRLEEEADRVITYLDQSTQKWLVASVEKQLLG
EHLTAILQKGLNHLLDENRVADLTLLYQLFSRVKGGLQVLLQHWNEYIKTFGTTIVVNPE
KDKTMVEELLDFKDKVDHIIEVCFLKNEKFINTMKEAFETYINKRPNKPAELIAKYVDSK
LRAGNKEATDEELERMLDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSML
SKLKHECGAAFTSKLEGMFKDMELSKDVMVQFKQYIQNQNDPSRIDLTVNILTMGYWPTY
TPMEIHLPAEMVKLQEVFKMFYLGKHSGRKLQWQATLGHSVLKADIKEGKKELQVSLFQT
LVLLMFNEGDEFSVEEIKTATGIEDSELKRTLQSLACGKARVLNKAPKGKDVEDGDKLIF
NDDFKHKLFRIKINQIQMKETVEEQTSTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLV
SELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNANQYHYVA
NT seq 2472 nt   +upstreamnt  +downstreamnt
atgctgcggccgtcggcgccctgcgacagctcgccggacgaggagcggcgcgccgatgtc
agtggccgcggacaccccaaaaagagagtgcggatcgccgagcccgagcaggcggtggct
aaagcggcctcggcgcagctgctcgtcctggccgaggccggccagggcaggaaacgtgtg
cggccggcacaggcccaggcccaggtcgagggggacatggcggacgacgggcagcggaag
gccaacttttcggcgctgctcggtcacaccaacgggctgagccgtgccggaggcaaaccc
gccgcatccaggaagctactcatcaagaactttaaagataaacctaaattgccagataac
tacactcgggacacatggcagaagctccatgaagcagttgggacaattcagaacagcaca
tcaataaaatacaacttagaggaactttatcaggctgttgagaatctgtgttcttataag
gtgtcagcaacgctatataaacaactgcgacaggtgtgtgaagaccacgtcaaggcacag
attcaacaattccgagacacggattcactggatagcagtctgtttttgaagaagattaac
aaatgttggcaggatcattgtcgacaaatgataatgatccggagtattttcctgtttctt
gaccgaacctatgtcctccagagttcaatgcttccatctatctgggatataggcttggaa
cttttccgaacccacatcatcaatgacaaaactgtgcaaaacaaaaccattgatggaatc
cttctgttaattgaaaaagagagaaatggagaggctgtggacagaagtctgatacgaagt
ttgctgagtatgctgtcggatctgcaggtttaccaggaatcgtttgaacaaaggtttttg
gaggaaaccaattgtttatatgcagcagaaggacaaagattaatgcaagagagggaggtc
ccagaatatcttcaccatgtgaacaagcggctagaggaagaagcggaccgagtaattaca
tacctggatcaaagcacgcaaaaatggttggttgccagtgttgagaaacagctccttggt
gaacatctgacagctattcttcaaaaaggtctcaatcatctgcttgatgaaaacagagtt
gctgatctcacactactttatcagctgttcagcagggttaaaggtgggctacaggtcctt
ttgcagcactggaatgaatatatcaagacctttggcactacaatcgtggttaatcctgaa
aaagacaagacgatggttgaggagctgctagacttcaaagataaagtagatcatatcatc
gaagtgtgctttctaaaaaatgaaaagtttattaatacaatgaaagaagcttttgagact
tatattaacaaaaggccaaacaagcctgctgagttgatagccaagtatgttgattccaaa
ttacgagctggtaacaaagaagccaccgatgaagaactggagagaatgctggataaaatt
atgatcatatttagattcattcatggaaaagatgtatttgaggccttctacaagaaggat
ttagcaaaacggctgctagtgggaaaaagtgcttcagtggatgctgagaaatcgatgttg
tctaaactgaaacatgaatgtggtgctgcattcaccagcaagctagaagggatgtttaaa
gacatggagctttcgaaagatgttatggtgcagtttaagcagtatatccaaaatcagaat
gacccaagtaggatagaccttacagtcaacattctgacgatgggatattggccaacatac
acacccatggaaatccatcttcccgctgagatggtgaaattacaggaggtattcaagatg
ttctacctcggaaaacacagtggaagaaaactgcagtggcaagcaacattagggcactcg
gttttgaaagcagatatcaaagagggtaaaaaggaactgcaggtttcacttttccagacc
ttggtgttgcttatgttcaatgaaggcgatgagttcagtgtggaggaaatcaagactgca
actggtatagaggacagtgaattaaaacgaacattacagtctttagcttgtggcaaagct
cgtgtgttgaacaaagctccaaagggaaaagatgtagaagatggagacaagctaatcttt
aatgatgacttcaagcacaaactgtttagaataaagattaaccaaatccagatgaaagaa
actgttgaggagcagacaagcaccaccgagcgagtgttccaggatagacaataccaaatc
gatgctgctatagtccgaatcatgaaaatgaggaagacactcagccataacctccttgtt
tcagaactctacaaccagttaaaatttccagtaaagcctggagatctgaagaaaagaatt
gagtctctaattgatcgggattacatggagagggacaaagacaatgccaaccagtatcat
tacgtggcctaa

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