Leucoraja erinaceus (little skate): 129703383
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Entry
129703383 CDS
T09122
Symbol
dhx36
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129703383 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129703383 (dhx36)
03012 Translation factors [BR:
leri03012
]
129703383 (dhx36)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129703383 (dhx36)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129703383 (dhx36)
Translation factors [BR:
leri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129703383 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
PhoH
TsaE
AAA_14
NB-ARC
ABC_tran
DnaB_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
129703383
NCBI-ProteinID:
XP_055501741
LinkDB
All DBs
Position
14:complement(22366287..22436025)
Genome browser
AA seq
987 aa
AA seq
DB search
MSSSYRRDWRGGGGGGGGGGGGGGSSSAAAGGWDSSGPGAGPGGGRGRHPGHLKGKDIGL
WYAKRQGNRSKELERNERAVVQMDEAREEHITRLLNSVQTRSDYKEQRPSVSADSSRNWR
SSSSSTSTSTPMSINKEVKPETNADLEYLFEAIAQDVFLDEELKEDLVKKSTSSRYLEMK
KFREKLPSYSMKRELVDLIKANQVVVISGETGCGKTTQVTQFILDDYIERGVGSLCRVIC
TQPRRISAISIAERVASERAEACGDGNSTGYQIRLQSRIPRKQGSILYCTTGIILQWLQS
DTLLSTISHLVLDEVHERSLQSDILMTIVKDILTFRSDLKVILMSATLNAEQFSEYFGSC
PMQHIPGFTFPVKEYILEDVIELLHYSPQNQEIRRPSSKRRFMQGCMIRPEKERVEEEYQ
EQWPAYVRELQGRYSDSTIETLEILHDDDKIDLNLIVALIRHIVLSDEVRXWAILVFLPG
WDNISTLNDLLTAQTMFKSDRFVIIPLHSLMPSVNQTEVFKRPPPGVRKIVIATNIAETS
ITIDDVVHVIDGGKIKETHFDTQNNISTMAAEWVSKANAKQRKGRAGRVQPGACYHLYNG
LRESLLDDYQLPEIMRTPLEELCLQIKILHLGQIAEFLGKAMQPPSKEAINLSVTHLKEL
NALDRNEELTALGVHLARLPVEPHIGKMILFGALLCCLDPVLTIAASLSFKDPFVIPLGK
EKVADAKRRELSKQTRSDHLTVVNAFKGWEEAKRRGFRSERDYCWENFLSPNNLQMLHNM
KGQFAEHLLVAGFVSSRNPKEPKANINSDNEKLIKAVVCAGLYPKVAKIRPSFSKKRKMA
KVFTKSDGRVNIHPKSVNAEEGDFQHSWLIYHLKMRTSSIYLYDCTEVSPYSLLFFGGDI
SIKKEQDQETIAVDEWIVFQSPSRIAHLVKDLKKELDALLQEKIKKPRPVDWNNRSKDCA
VLSAIIDLITTQDSASAKNYTPRFQSY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgagttaccgcagggactggcgcggcggcggcggcggcggcggaggtggtgga
ggaggaggaggctcctcgtcagcggccgccggcggctgggacagctcgggtcccggggcc
gggcctggcgggggtcggggccggcaccctggacacctgaagggcaaggacatcggcctg
tggtacgccaagcggcagggcaacaggagcaaggagctggagcgcaatgagagggcagtt
gtgcagatggatgaagctcgagaggaacatatcacccgattactcaactctgtccagaca
cggagcgactacaaagaacaacgcccctccgtgtcagccgactcaagcagaaactggaga
agttcaagttcttccacttccacttccactcccatgtccatcaacaaagaagttaaaccg
gagactaacgctgacctggaatacctctttgaagccattgctcaggatgtcttcttggat
gaggagctgaaggaagaccttgtgaagaagtcaaccagttcaagatacctggagatgaag
aaatttcgggaaaaactcccctcctactccatgaagcgtgaactggtcgacctgatcaaa
gcgaaccaggtggttgtcatcagtggagaaacgggttgtgggaaaaccacgcaggtgacc
cagttcattctggacgactacatcgagagaggagtgggctctctgtgcagggttatatgc
acccagcctcgtcggatcagcgccatctctatcgctgagagagtggcgtcagaaagagca
gaggcctgtggcgatggaaacagtactggctaccagatccggttacagagtcgcatccca
cgcaaacaaggctccattttgtattgcaccactggaattattctccagtggctccaatcg
gacactcttttgtctaccatcagtcaccttgttctggatgaagttcacgagaggagctta
cagtcggacatactgatgaccattgtgaaggacattctgactttcagatcggatttaaaa
gtgatactaatgagcgcaactctaaatgctgaacaattttcagagtacttcggcagctgt
cccatgcagcacatcccaggatttaccttcccagtgaaagaatacattttggaggatgta
attgaattgcttcactacagtccgcaaaaccaagaaattcgaagaccgtcctccaagaga
aggttcatgcaaggctgcatgattcgaccggagaaagaacgggtggaagaggaatatcag
gagcagtggcctgcatacgtgagagagttgcaaggaaggtattctgacagtacaatcgag
accttggaaattctgcatgatgatgataaaatagatcttaatctgattgtagctcttata
aggcacattgttctctctgatgaggtaaggtgatgggccattttggtgttccttcctggc
tgggacaatatcagcaccttgaacgaccttctaactgcacaaaccatgtttaaatcagat
cgttttgtgatcattcctctacactctctcatgccttcggtgaatcagaccgaggttttc
aagaggccacctccaggagttcgtaaaattgtaattgccactaacattgcagagacaagt
atcaccatagatgatgtggtccacgtgatagatggaggaaagataaaagagactcacttc
gacacccaaaacaacatcagcacaatggcagcagagtgggtcagcaaagctaatgccaag
caaaggaagggtcgagctggaagggtacaaccgggcgcctgttaccacttgtacaatgga
ttgcgagagagccttctagatgactatcagttacctgaaatcatgaggacaccacttgaa
gagctttgcctgcaaatcaagattttgcaccttggtcaaattgccgaattcctgggaaag
gcaatgcagcctccatcaaaggaagccattaatctgtccgtgacccaccttaaagagttg
aacgccttggacaggaatgaagagctgacagcactcggtgtccatttagcccgtctgcca
gttgaaccccacattgggaaaatgatcctgtttggggcgttgttgtgctgcttggatccc
gtcctcaccatcgccgccagtctcagcttcaaggatccatttgtaatcccattgggtaaa
gagaaagtggcagatgcaaaacgtcgagagttgtccaagcaaacccgcagcgaccatctt
actgtcgttaacgcgtttaagggctgggaagaagctaaaagacggggattcagatcggag
cgggattactgctgggagaatttcctttcaccaaacaatcttcagatgcttcacaacatg
aaagggcagtttgctgaacacctgctggtagctggctttgtaagcagcaggaatcccaaa
gaacccaaggccaacataaactcagacaacgagaagctgattaaagctgtggtctgtgcg
ggcttgtatcccaaggtggcaaaaatccggccgagtttcagcaagaagcggaaaatggca
aaggtcttcaccaagtctgatggccgagtgaacattcatccaaagtcggtgaatgcggag
gaaggggatttccagcacagctggctcatctaccacctgaagatgcgtacaagcagtatc
tacctgtatgattgcactgaggtgtccccgtactctctcctcttctttggaggtgatatc
tcgataaagaaagagcaggaccaagaaaccattgctgtcgatgagtggattgtattccag
tcaccatcccgaatagcccatttagtaaaggacttgaaaaaggaacttgatgccctttta
caagagaagataaagaagccccgtcctgtggattggaacaaccgctcgaaagactgtgct
gtcctgtcagcgatcatagacttgataaccacgcaagatagcgcaagcgcaaagaactac
acgcctcgattccagagctactga
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