Leucoraja erinaceus (little skate): 129704184
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Entry
129704184 CDS
T09122
Symbol
taf5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129704184 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129704184 (taf5)
03036 Chromosome and associated proteins [BR:
leri03036
]
129704184 (taf5)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129704184 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
129704184 (taf5)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
129704184 (taf5)
STAGA complex
129704184 (taf5)
TFTC complex
129704184 (taf5)
SAGA complex
129704184 (taf5)
SLIK complex
129704184 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_SPT8
Beta-prop_DCAF12
PROPPIN
VPS8_N
Beta-prop_ELP1_1st
VID27
CFAP143
Motif
Other DBs
NCBI-GeneID:
129704184
NCBI-ProteinID:
XP_055503096
LinkDB
All DBs
Position
15:34817128..34829719
Genome browser
AA seq
762 aa
AA seq
DB search
MVVKMAAVPEPPSEGATPAATAVPAPAPVPVPSPAPVPAASPAPSPSPSPSPTLAVKAEA
AESPGAGAGAGPGGGPGVGAGTGTGTGTXGAGAAPAPAPAPGTELSERHTLLAVLQFLKK
NRFREAEETLRREASVQEGPDEALRAAGPRGSDSVHQPDVSSVLSAYSNQGDPSLYEEYY
CGLKAFIEAALDALKAELASLLYPVFVHLYLELVYNEHEREARLFFHRYHGDQEGYYHDD
LRVLAGLSKKEHMQGNETVLDFRTSKFVLRISRDSYQCLKRHLQEQHNNQIWNIVQEHLF
IDVFDGMPRSKQQIELTSGGMAGEAKREANKTKVFFGLLKEPEIELPLDDEDEEGENEEG
KPKKKKPKKDSLGAKSKKQDPNAPQVNRIPLPELKDSDKLDKIMIMKEATKRVKLGPDCL
PSICFYTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSATPKKLRSVKGATDLSLIDK
ESEDVLERIMDEKSACEFKMLLGHGGPVYGTSFSPDRNYLLSSSEDGTVRLWSLQTFTCL
VGYKGHNYPVWDTQFSPYGYYFISGGHDRVARLWVTDHYQPLRIFSGHLSDVTCTRFHPN
SNYVATGSADRTIRLWDVLNGNCVRILTGHKGPIHSLAFSPSGRYLASGATDGRVLLWDI
GHGLLVGELNGHTDTVYSLKFSRDGEILASGSMDHTVKMWDTIKAFEDLETDDFSTATGH
INLADNSQELLLGSYMTKSTPVIGLHFTRRNLLLAAGAYNPQ
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgaagatggcggcggtgccggagccgccgagcgaaggggcaactcccgcagcc
accgcggtcccagccccggctcccgtgcccgtcccctccccggcgcccgtccccgctgca
tcccccgcaccctcgccgtcgcccagcccgtcgccgacgctggcggtgaaggcagaggcg
gcggagagcccaggggccggggccggggctgggcctggcgggggcccgggagttggagct
gggaccgggactgggactgggaccnngggagctggagccgcccccgcccctgcccccgcc
cccgggaccgagctgagcgaacgccacacgctgctcgccgtgctgcagttcctgaagaag
aaccgcttccgtgaggcggaggagacgctgcggcgggaggcgagcgtgcaggaggggccg
gacgaggctctgcgggcggccgggccccgcggatccgactccgtgcaccagcccgacgtc
agctcggtgctgtcggcctacagcaaccagggggaccccagcctgtacgaggagtactac
tgcggcctcaaggccttcatcgaggcggcgctggacgcgctcaaggccgagctggccagc
ctcctctatccggtcttcgtgcacctctacctggagctggtgtacaacgaacacgaacgg
gaggcccgcctcttcttccataggtaccacggagatcaggaaggctactaccatgatgac
ctgcgggtgctggccggcctgtccaagaaggagcacatgcagggcaacgagacagtgctg
gacttccgcaccagcaagtttgtgctgcgcatctcgcgggactcttaccagtgcctgaag
cgacacctgcaggagcaacacaacaaccagatctggaacattgtgcaggagcacctcttc
atcgatgtcttcgacggcatgcccaggagcaagcagcagatcgagctgacctccggaggg
atggccggcgaagccaagagggaggcaaacaaaaccaaggtgttctttgggctgctgaag
gagcccgagattgaactgcctctggatgacgaagatgaggaaggagagaatgaggagggc
aaacccaagaagaagaagccgaagaaggacagtctgggggccaagagcaagaagcaggac
cctaatgctcctcaagtgaacagaattccacttcccgagctgaaggactctgacaagttg
gacaagatcatgataatgaaggaagccacgaagagggtgaagctcggtcctgactgcctg
ccttccatctgcttttacacctttctcaacgcctatcagggtctcactgcggtcgatttc
accgacgattccagtctgatcgcgggcgggttcgccgattccaccgtgagggtgtggagc
gccacgccgaagaagctgcggagcgtcaaaggggctacggatctcagtttaatcgacaag
gaatctgaggacgtgctggagagaataatggatgagaagtctgcctgcgagtttaaaatg
ttactgggacatggtggccccgtgtacggcaccagctttagtcccgacaggaactacctt
ctgtccagctcggaagacgggacggtgaggctgtggagtctacaaaccttcacctgcctg
gtgggttacaagggacataactacccggtgtgggacacccagttctctccatacggctac
tacttcatttcagggggccacgatcgagtggcacggctctgggtgacagaccactaccag
cctctgcgaatcttctctggtcatctctctgatgtcacctgcaccagatttcaccccaac
tccaactacgtggcaactggatctgcagacaggaccatccggctctgggacgttctgaac
ggcaactgcgtgcgaatcctgactggacacaaggggccgatccactcgctggcgttttct
cccagcggcaggtacctggcgtcaggcgccacggacggacgggtgctgctgtgggacatc
gggcacgggctgctggtgggggagctaaacggccacacggacaccgtctactctctcaag
ttcagtcgggacggcgagatactagcctcaggctccatggatcacacggtgaagatgtgg
gatacgatcaaggcctttgaggatctggagacggacgattttagcactgccaccggccac
atcaacctggccgacaactcacaggagctgctgctgggctcctacatgaccaagtccacg
ccagtcatcggcctgcacttcacccgccgcaacctgttgttggctgccggggcctacaat
ccccagtga
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