Leucoraja erinaceus (little skate): 129704616
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Entry
129704616 CDS
T09122
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
129704616 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
leri03036
]
129704616 (mbd4)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129704616 (mbd4)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
129704616 (mbd4)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
129704616 (mbd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Clr2_transil
TORC_M
FilE_C
MRP-S27
Motif
Other DBs
NCBI-GeneID:
129704616
NCBI-ProteinID:
XP_055503832
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All DBs
Position
16:complement(23553543..23570741)
Genome browser
AA seq
523 aa
AA seq
DB search
MDEPPFSQVSNGQYCELKELTKNSESVDTGSTFSPSFEALSSFQAMDLATSQADYPQLPD
GWKRIVKERKNGRSAGKSDVYLISPQGKRFRSSREIENYFQRSIGEASFLNAKDFNFTFC
RRGYVRQNRRSKHATPLHKKTTEDIGKLARDVPQALPHVLQNAEEEEGPETEAYSPLVQR
PQVKVNTSNQGPEIGTKQQHLSRLRRSSRRASSAGDGQKECPSAEDKEAERRKTKVKGEG
RTSSRKCHQQAADSKMQLPNQQPFENKVMLELQSLQGGEHVPDILEFNFQTPLSEEIDVD
ISTLSAASEEKIGMSHTQGSHPNSDKSTRTPDEDRLVLLKTQVNSEPSPKKKVERRKTSP
YFSRNYAKEAPSPPRRKAFVKWTPPRSPFKLIQETLFHDPWKLLVATIFLNKTTGRKAIP
VLWDFLERYPSAEIAQAADWKEVAALLKPLGLNELRAKAIIKFSDQFLTKQWRYPIELHG
IGKYGNDSYRIFCVKEWKKVQPQDHKLNKYWQWLWENQEMLAL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggatgagcctccttttagccaggtcagcaatggtcaatactgtgagctgaaggaacta
acaaagaacagtgaatcagtggatactggaagcacattctccccatcgtttgaagctttg
tcttccttccaggctatggatcttgcaacatcccaagcagattatcctcaacttccagat
ggctggaaaagaatagtcaaagaaagaaagaatggaaggtcagcaggaaaatcagatgtt
taccttataagtcctcaagggaaacgattccgatcttcaagggaaattgaaaattacttt
cagaggagcattggagaggcaagttttttgaacgccaaagattttaacttcaccttctgt
cggagaggctacgttcggcaaaataggcgctctaagcacgcaacaccccttcataaaaaa
actacagaagatatcggaaaattggccagagatgttccacaagctctaccacatgtctta
caaaatgctgaggaagaggaaggacctgaaactgaggcttatagccctttggtccaaaga
cctcaggtgaaagttaacacctcaaatcagggacctgaaataggtacaaaacagcagcac
ttgagcagactaagaaggagttctaggagagcatcatctgcaggagatggacagaaagaa
tgtccatcagctgaagataaagaagctgaaagaagaaaaacaaaagtaaaaggtgagggg
aggaccagcagcagaaagtgccatcagcaagcagcggacagcaaaatgcaacttccaaac
cagcagccattcgaaaacaaggtcatgctggaactgcaatcactccaaggtggtgagcat
gtccctgatattcttgagtttaactttcaaacaccgctcagtgaggagattgatgtggat
atctccacattgtctgcagcatccgaagaaaaaataggtatgagtcatacacaaggcagc
cacccgaattcggacaaaagcacaagaacacctgatgaggatagacttgtattactgaaa
acacaagtgaacagtgagccttctccaaagaaaaaggtagagcggaggaagaccagtcca
tacttttccaggaattatgccaaagaagcgcccagcccaccacgtcgcaaagcttttgtc
aagtggactccaccgcgatcgccctttaaacttattcaggagacactctttcacgatcct
tggaagcttcttgttgccaccatttttcttaacaaaaccacaggtagaaaagccattccc
gtgctgtgggatttcctggagagatacccttctgctgaaatagcgcaagctgctgactgg
aaggaagtagcagcattgctgaagccactcggcctaaatgagttgagagcaaaggccatc
attaagttttctgatcagttccttaccaaacagtggaggtacccaattgaactacatgga
attggaaagtatggaaatgattcctacaggattttttgtgtcaaagaatggaagaaggta
caaccccaagatcataaattgaacaaatactggcaatggctttgggaaaatcaagagatg
ctagccctttag
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