Leucoraja erinaceus (little skate): 129704654
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Entry
129704654 CDS
T09122
Symbol
xpc
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
129704654 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leri03400
]
129704654 (xpc)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
129704654 (xpc)
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GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
129704654
NCBI-ProteinID:
XP_055503902
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Position
16:complement(24823462..24844733)
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AA seq
908 aa
AA seq
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MAKRKVSTQSPAQNHRKRVKGECRTQRAEGCSAKSAKSANHQHPGDDSQDFEPEKPQLKP
KVCGKGAQHKKTAKRKSSEGGGKRGTSVVKEGAGDRAGGRGTVASLTGHEKETENTTEES
EEEWQEVEELLEDPEEPPPLPEPSLPEQPLEIEIETPLRAKERKSREKMEAEFESYLRRA
INRFSRQLRVDIHKTHLLCLLANGMFRSRTCNQPELRAVALSLLPTEIAGVVAGQVDLPY
LNKVLAWFESAFVLDLSLPRGDSEQLSERLQRGLARRSAGTAEELVHLFLITVCALALSA
RLVVSLQPIPLKESTKAKTPRRRRSEVKDTPTSTPRAKPGAAAGKAGGKREGEREAGEKT
ERREGSRRARASAAVHGGRGRKVECTEASGESGFEEDERRRNPANARAKNQRQRRVASKI
SYREATDESDSESENSSSYSAGGEGSVSRGREERGVSGRSSEMSEDEDFERNPVKNKAKG
RSSGRQKPSDGVVGPAVEVPARATPSDQWVEVFLEVEKRWVAVDCVHSAVDRLELCVRHA
TKPLRYIVGFDGQGCVRDVTQRYDTAWMTATRKIRVDAVWWDQTLSPYRSTFTQRDMLED
RELRAKLMDQALPTSIAGYKDHPLYVLQRHLLKYETIHPPTAAILGYCRKEPVYSRDCVH
VLHSKDTWLKEARVVREGEVPCKMVKSQSNRARQARAANWETRDQGDLGLFGWWQTEVYQ
PPCARDGKVPRNEFGNVYLFRSCMLPLGCRHVRLPNLNRVARKLDIDCAAAVTGFDFHCG
HSHPIMDGYVVCEEHVDILKTACEQQEAEMAKREEQKREKRVLGNWKLLVKGLLIRDRLR
ARYGNQESGRVDSGTGEAGCSEEEGPSEPTPVTDAASSWPLNRQGGERREGRKLKRGEEK
HLFPFEKL
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaggaaagtgtcaactcagtctccagcccagaatcacagaaaaagagtgaaa
ggggagtgcagaactcaacgggccgaagggtgttcagcgaagagtgcaaaatctgcaaat
caccagcatcctggtgacgatagtcaggacttcgagccggaaaagcctcagttgaagcca
aaggtctgtgggaagggagcacagcacaagaagacggcgaagagaaaatcatcagagggc
ggagggaagagaggaacttctgtggtgaaggagggagcgggggacagagcaggaggcaga
ggaactgtggcaagtttgacaggccatgagaaggagacagagaatacaacggaggaaagc
gaagaagagtggcaggaggtggaagagctgctcgaggatccagaagaacctccgccactt
ccagaaccctccctcccggagcaaccactggagattgagattgaaactccactgcgtgcc
aaggagaggaagagcagagagaagatggaggctgagtttgagtcctacctgcgccgagcg
ataaaccgtttcagccggcaactccgtgtggacatccacaagacgcacctcctctgcctg
ctggctaacggaatgttccggagcaggacctgcaaccagccagagctgcgggcggtggct
ttgtccttgttgcccacggagattgctggtgttgtggccgggcaagtggacctcccgtac
ctcaacaaggtgctggcgtggtttgagtcggcgtttgtgttggacctgtctctgcctcgg
ggtgactcggagcagctgagtgagcggctgcagcgtggtcttgcccgccgttccgcgggg
acggcagaggagctggttcacctgttcctgatcacggtgtgtgcgctggccctctctgcc
cgcctggtcgtctcgctgcaacccatcccactcaaggagagcaccaaggcgaagacccca
agaagacgaagatctgaagtcaaggacactcccacctcgacgccccgggctaaacctgga
gcagctgccggaaaagcaggcggcaagcgtgagggcgagagggaagcgggggagaagaca
gagagacgggaggggtctagaagggccagagcctcggccgcggttcacggagggagaggt
cggaaggtcgagtgtacagaagcctcgggcgagtcgggattcgaggaagatgagcggcga
agaaacccggcgaatgcgagggcgaagaaccagcggcagagacgggttgcctcgaagatc
tcgtacagggaggcgaccgatgaaagcgactcggagagtgagaattccagcagttactcg
gcagggggcgagggaagcgtgtcacgaggccgggaagagcgcggtgtgtcgggaaggagc
tcggagatgagtgaggatgaagacttcgagaggaacccggtgaagaacaaggccaagggg
agatcttcgggccggcagaagcccagcgacggagtcgtggggccagcggttgaggtgcca
gcgcgcgccactccttcggatcagtgggtggaggtcttcctggaggtggagaagaggtgg
gtggcggtggactgtgtacacagcgccgtggaccggctggagctctgcgtccggcacgcc
accaagccgctccgctacatcgtgggcttcgacgggcagggctgcgtccgggacgtgacc
cagaggtacgacactgcgtggatgacggccacaaggaagatccgtgtggacgccgtctgg
tgggatcagactctgtcgccctacaggagcaccttcactcagcgggacatgctggaggat
cgcgagcttcgcgctaagctgatggaccaggctctgcccacctccatcgccggctacaaa
gaccaccccctgtacgtgctgcagcgacacctcctcaagtacgagaccatccacccaccc
actgccgccatcctcggctactgcaggaaggagcccgtctactcccgggactgcgtacac
gtgctccattccaaagacacttggctgaaggaggcgcgcgtggtgagagagggtgaggtg
ccctgcaagatggtgaagagccagtctaaccgggcgcgccaggcacgggctgccaactgg
gaaacccgcgaccagggcgatcttgggctgttcggatggtggcagacagaggtttatcaa
cccccctgcgccagggacgggaaggtgccgcggaatgagtttggcaacgtctacctgttc
agaagctgcatgctgccactgggctgccggcacgtccggctgcccaacctcaaccgcgtg
gcccgcaagctggacatcgactgtgccgctgccgtgaccggcttcgacttccactgcggc
cactcacacccaataatggacggctacgtggtgtgtgaggaacatgtggacatcctgaag
acagcatgtgagcagcaagaggcggagatggccaagcgggaggagcagaagcgggagaag
cgagtgctgggcaactggaagctgctggtgaagggactgctcatcagagaccgactgaga
gctcgatacggcaaccaggagagtggccgtgtggactctgggacgggagaagcaggctgc
tctgaagaggagggtcccagtgaaccgacgccagtcacggacgccgcctcttcctggccc
ctcaaccgacagggtggggagaggagggagggccgcaagctgaaacgaggcgaggagaag
cacctcttcccatttgagaagctgtga
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