Leucoraja erinacea (little skate): 129704671
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Entry
129704671 CDS
T09122
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1-like
KO
K14966
host cell factor 1
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03083
Polycomb repressive complex
leri04980
Cobalamin transport and metabolism
leri05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
129704671
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
129704671
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129704671
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
leri01009
]
129704671
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
leri03036
]
129704671
03029 Mitochondrial biogenesis [BR:
leri03029
]
129704671
Protein phosphatases and associated proteins [BR:
leri01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129704671
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
129704671
HMT complexes
COMPASS/SET1 complex
129704671
MLL-HCF complex
129704671
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
129704671
Mitochondrial biogenesis [BR:
leri03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
129704671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_5
Kelch_3
Kelch_4
Kelch_1
Kelch_6
Kelch_2
fn3
Motif
Other DBs
NCBI-GeneID:
129704671
NCBI-ProteinID:
XP_055503931
LinkDB
All DBs
Position
16:complement(25337273..25404939)
Genome browser
AA seq
1585 aa
AA seq
DB search
MAAPILRWKRVTNSSGPVPRPRHGHRAVSIKELMVVFGGGNEGIVDELHVYNSATNQWFI
PAVRGDIPAGCAAYGFVCDGTRLLVFGGMVEYGKYSNELYELQASRWEWKKLKARAPKNG
PPPCARLGHCFSVIDNKCYLFGGLANDSEDPKNNIPRYLNDLYILELKPGSGVVGWDIPV
TYGTPPPPRESHTAVVYRSKDTSKQKLVIYGGMSGCRLGDLWILDVESLTWNKPEVAGVP
PLPRSLHSATMIGSKMYVFGGWVPLVLEDVKVPTHEKEWKCTNTLACLDLETMIWTQIST
ESFEDSIPRARAGHCSVSISTRLYVWSGRDGYRKAWNNQVCCKDLWYLETEKPPAPGKVQ
LIRASTNSLEVSWGSVSTADSYLLQLQKYDVPVATAAMTPLTNSAVSGIRAPSSPAPATA
APASPSPAQLGIRFVTRTAATPGTQAAPLTPAATSPAVLRIPATMVSPRTPAGQTVVGPA
ASTAPLVTVQRAGAPQGKAPITVATLPPGIRMVRPAQTTAGTPLTSSPQMSGMAALAAAA
AATQKIPSSTAVTSIGIHPGTTMVKTVAVTPGANTLSNAVRVATPSVMVNAPATSMLKTA
AAQLVTPTHVATTMAPARPIITVHKSGTVTVTQQAQVVTTMVGGVTKTITLVKSPISMAG
GSTLISNLGKMLTLQAKPGQQATISGTGSSGPLTQIFQTKGQLPPGATILKLVTSADGKP
ATIITTSQAGNVGLKQTLMSLGNMSPASSKPATTILKTIPMSALISQPSTTGVTGTAGIK
SPITIITTKVMTSGTGTPTKFITAVPKLQGQGLTQVLLKGAAGQPGTILRTISGTPMSGV
RLITPVTVSTTKPALTTLVVKGTTDVNTLGTMGTTLAGVSTVLPTLNTSMATLGTITNLA
GQVIGVSSNTSQKLTAVTGATSTAPIIALQPASEPNRVTIVAAPSGVVTQQAQQLVNSGS
TLITASRPSTVTSETQTQQLKLIEAPVRCSNPPHETMDTNTTNTSTTTTANIAANQVQPT
ALNAQGLPESVHGETATTGTNNTATTASTAQSGAVTTVTQSTPVPGPSTQSVPLPEAQSN
SGVQGSVATVGHTTLQILPPNSSAAAENMEVTPQTEAEGVPMPSAPAVQAQPTVSLQQEQ
LLPPRELLADSRPETLGELGLSPEELAVAAAAEKAARLALLEEESRAATAAAAALASEEA
AAREEPMETSSAELAAIQPSKLSHQALQTLVSLQSIVPLAELAQQDIERAGQQQASESNQ
PSGIAEALAPADSLNDSTSETNGPQELASTVSSVQLPILRTTGLAPYTSLLTPTTNSVSS
PVKLLAATALAQVANGIGLAASKQDASPAQPKPTARKEANQWYDVGLYKTTNTLVVSYFL
PTEGSQVEEDGSGDNIPDHSNRKTMKLQSGTAYKFRVTGINSCGRGAFSEISAFKTCMPG
FPGAPSAIKISKVAEGAQLSWEPPAVTSGVIIEYSVYLALPGSQVADPKPVGTSHLLFVR
VYCGPIPSCLVSSTNLANAHIDRTTKPAIIFRIAAKNEKGYGPATQVRWLQDASKDGARP
AIKRSVTSPDDKLLNLNKKPKPDGS
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcccatactgcgctggaaacgcgttaccaacagcagcgggccggtaccgcgg
ccgcgccacggccaccgcgccgtctccatcaaagagctgatggtagttttcggcggtggc
aacgaggggatcgtggacgagctgcacgtttacaactcagcgaccaaccagtggttcatc
ccggcagtgcggggggatattcccgcaggatgtgcagcttatggatttgtgtgcgatggg
actcgcctgctggtctttggtggcatggtggagtatggaaagtacagtaacgagttgtat
gaactgcaggcaagccggtgggaatggaagaaattgaaagccagagcccccaaaaatggc
cccccaccatgtgcccgactcggacattgcttttcagtaatcgacaacaaatgttattta
tttgggggattagccaatgacagtgaagatccaaaaaacaatatcccacggtatttaaat
gacctgtacatattggagcttaagccagggtcaggagttgtaggatgggacataccggtc
acatatggaactcctcccccacccagagaatctcacactgcagtcgtgtatcgcagcaag
gacaccagtaaacaaaaactggtcatctatggtgggatgagcggctgcaggcttggagac
ctgtggattctggatgttgaaagtttaacgtggaataagccagaggttgccggagttcct
ccgttgcccagaagcttgcactctgcgacaatgatcgggagcaaaatgtacgtttttggt
ggctgggtcccccttgttctggaagatgtcaaagttcccactcatgagaaagaatggaag
tgcacaaatacgttggcatgcctggatcttgaaacaatgatttggactcagatctcgact
gaatcgtttgaggacagcatccctcgtgcaagagctggtcactgctcagtctccataagc
acacgtctctatgtgtggagtggtcgagatggttaccgcaaagcttggaacaatcaagtc
tgttgtaaagacttgtggtatcttgaaacagaaaagcctccggctcctggcaaggtccaa
ctgattcgagcaagcaccaactccctggaggtcagctggggatccgtgtcgactgccgac
agctacttgcttcagcttcagaagtacgatgtaccagtagccaccgccgccatgacccct
ctgaccaactctgccgtgtcaggcattcgggcgcccagcagtcccgctcccgccaccgca
gcaccagcctcgccttcgcctgcgcaattgggaatccgctttgtgacgcggactgctgcc
acgccagggacgcaggctgcacccctcacccctgccgccacatctccagctgtgctcaga
atcccagccaccatggtctctccacgcactccagccggccagacggtggtgggaccagca
gcttctaccgcacccctcgtcactgtacaacgggcaggtgcacctcagggtaaagccccc
atcactgtggcgacccttccaccgggcatccgtatggtgaggccagcacagaccacagcg
gggacgccgcttacctccagcccacagatgagtgggatggcagctctggctgctgcagcc
gctgccactcagaagattccttcaagcacagcggtcacctccattggaattcaccctggc
acaaccatggtcaaaactgtggcagtcacccctggagccaatactttgtcaaatgctgta
agagtagcaacaccatcagtcatggtcaacgcaccggcaacctcaatgttgaagactgca
gctgctcagttagtgactccaacgcacgttgccaccaccatggctccggctagacccatt
attacagtgcacaagtcaggaacagtcactgtgacccagcaagcacaggtggtgaccact
atggtgggaggtgtcactaaaaccatcacgctggtgaagagccccatctccatggcagga
ggaagcacactgatttccaacctgggcaaaatgctcacgctgcaagctaaaccaggacaa
caggctaccatctcaggcacaggctcctccgggccacttacacagatcttccagaccaaa
ggtcaactgcctccaggggcaaccattttaaagctcgttacctctgcggatgggaagcct
gccaccatcatcaccacctcccaagcgggaaatgtgggcctaaagcagacgctcatgagc
cttggtaacatgtcgcctgcctcttcaaaaccagccaccaccattctcaaaactatccca
atgtctgcccttatatcacagcccagcactacaggtgtcacagggactgctggcataaaa
tcaccaattacaatcatcaccacgaaagtaatgacgtctggaacagggacaccaacaaaa
ttcatcactgctgtgcctaaactgcaaggacaaggactgacccaggtgttgctgaagggt
gcggcaggacagcctggcactatactacgcacaatctctgggacaccgatgagtggagtc
aggttgatcaccccagtaaccgtgtctaccaccaaaccggcactcaccactttggtagtg
aaaggcaccactgatgtcaatacattggggacaatgggcaccacactagcaggagtgtct
actgtattgcccacactcaacacttccatggcaacccttggcaccatcaccaaccttgcc
gggcaggtaatcggtgtatcctccaatacctctcagaaactcactgccgtaactggagcc
acctccacagctcccatcattgctcttcagcctgcttctgagccgaacagggtgacaatc
gtggctgctcccagtggcgtggtgacacagcaggcccagcagctcgtgaactcgggatcc
actttgatcacagcctctcggccttccaccgtaacgtcagagactcagacccagcagctc
aagctgatagaagcaccagttaggtgttcgaatcctccacacgagaccatggacactaat
accaccaatacgtctacaaccaccacagcaaacattgcggcaaatcaggtccagcctacc
gccttgaatgcgcaaggcctccctgaaagtgtgcatggtgaaactgcgacaacaggaaca
aataacaccgcaaccactgcttccacagctcagagtggcgcagtcaccacggtaacgcaa
tccacacccgtgcctggcccctccacacagtcggtcccgttgcctgaagctcagtctaac
agtggtgtgcagggttctgtggcgacggtgggccacaccactctacagatactgcctccg
aactcatcagctgcagcggaaaacatggaagtaacccctcagacagaagcagagggtgtc
ccaatgcccagtgccccagctgtgcaggcacagcccacagtcagcctgcagcaggaacag
ctccttccccctcgtgagctgctggcagacagtcggcccgagaccctgggcgagctgggg
ctgtcccctgaggagctggcagtggcggctgccgctgagaaagcagcccgcctggccttg
ctagaggaggaatccagggcagcaacagcggcagcagcagccctggcatctgaagaggcc
gcagcgagggaagagcccatggaaacctcatcagcagagttggcagcaatacagccctca
aagctttcccaccaggctctgcagacactggtgtccctgcagtctattgtaccgttagct
gaacttgcacagcaggacatagaaagagcaggccagcaacaggcttcagagagcaaccaa
ccctccgggatagcagaggccctagcaccagcagatagtctcaatgattctacctcggag
accaatgggcctcaggaactggccagcactgtctcgagtgttcagctgcccattctgaga
accacgggtctggccccatacacttctctactgacaccaacaaccaactccgtttccagc
cctgtgaaactgctggcggccactgctttagctcaggtagccaacggaatcggacttgct
gcatcgaaacaggatgcctctcctgcccagccgaagccaacagccaggaaagaagccaat
cagtggtacgatgttggcttgtataaaactacaaacacattggtggtctcatatttcttg
cctacagagggctctcaagtagaagaggatggaagtggagacaatatcccagaccactcc
aaccggaagaccatgaaactgcagtcgggcactgcgtataaattccgggtgacaggaata
aattcctgtggacggggtgcattcagcgaaatttcggcctttaagacttgcatgcctgga
ttcccaggagcaccatcggccatcaagatcagcaaggtagctgaaggtgcacagctctcg
tgggagcctcctgccgtcacctccggagtcattatcgaatattctgtgtatctggcactt
ccaggctcacaggtagcagatcccaaacccgtggggacttcgcatctcctctttgtccgt
gtttactgtgggccaattcccagttgtcttgtgtcttcaaccaacctggcaaacgcgcac
atcgacagaaccactaagcctgcaatcatcttcaggatagcagcaaagaacgagaaggga
tacggaccagccacccaggtccggtggctgcaagatgccagtaaagatggagcaaggcct
gcgatcaagcgttctgtcacatctcccgatgacaagctattaaacttgaacaagaaaccc
aagcctgatggttcctaa
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integrated database retrieval system
