KEGG   Leucoraja erinaceus (little skate): 129704888
Entry
129704888         CDS       T09122                                 
Symbol
pbrm1
Name
(RefSeq) protein polybromo-1 isoform X1
  KO
K11757  protein polybromo-1
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129704888 (pbrm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:leri03021]
    129704888 (pbrm1)
   03036 Chromosome and associated proteins [BR:leri03036]
    129704888 (pbrm1)
Transcription machinery [BR:leri03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     129704888 (pbrm1)
Chromosome and associated proteins [BR:leri03036]
 Eukaryotic type
  Chromatin remodeling factors
   PBAF complex
    129704888 (pbrm1)
SSDB
Motif
Pfam: Bromodomain BAH HMG_box HMG_box_2 HMG_WDHD1
Other DBs
NCBI-GeneID: 129704888
NCBI-ProteinID: XP_055504266
LinkDB
Position
16:complement(44516505..44584916)
AA seq 1684 aa
MRTFSLILPVPMGSKRKRATSPSSSISGGDCDDGHHVSGSNAGSSRKRRKVANVPTVDPI
AVCHELYNTIRDYKDDHGRLLCELFIRAPKRRNQPDYYEVVSHPIDLLKIQQKLKMEEYD
DVDQLTSDFQLMVNNAKAYYKEDSAECKAASKLWDLYTRTRNEFVQRGDYEQEDEEDDYD
GHDHPGTAGDEDGAAHYNNLKEQLENLFEAVATYADPSGHLVSELFQKLPSRVQYPDYYE
IIKEPVDLKTVAQRIQNGAYKNVNVMARDIELLVRNAKTYNEPGSPIFKDANTIKKVFNQ
KRAELEHNLEPTKSSLRIRNRRSAQGDRLSAITMALQYGSESEEEAGLGAVTHFEDGDSD
GESIGSSVDVTSPIYQLFEAVRNHRNSQGQLLAQPFFRLPSKKDYPDYYQQIKHPMSLQI
IRQKLKNNEFENLDQLEADMKLMFENAKHYNIPNSAIFKRVLKLQQVMQAKRKELARREY
TEDGDSMVSSVTSDTGSGKRKGFLNSSNKKLERIGKKTETHLKHRLKVLYNTIIESRDLT
TGRRYCELFLIRPSKKDYPDYYKVILEPIDLKILEHNIRNEKYTSDEAFIDDLKLMFRNA
RHYNEEGSQVYNDANILEKILKDKIKELGPLPDDDTASPKLKLSRKSGISPKKSKYLTPL
QQKLNELYEAVKNYTDVRGRRLSAIFLRLPTRSELPDYYLTIKKPIDMEKVKSHMMSNKY
QDVDSFVDEFVLMFNNACTYNEPESLIYKDALVLHKVLLETKRDLDGEDDAHIPNVKLLI
QELIHNLFVSVLSHQDDEGRCYSDSLAEIPATDPSTPNKPPLTFEIIRKNIETNRYRRLD
VFQEHMFEVLERARRLNRTDSEIYEDAVELQHFFIKIRDELCKNGEILLSPALSFTLKHL
QHDLEKEKKEKLPKEIEEDKQKREEEKKELSESEKNMSDDHSGSHGTYGFQRTYSQDCSF
KDNMYHVGDYVYVEPAEPNLLPHIVCIERLWEDDTGEKWLYGCWFYRPNETFHLATRKFL
EKEVFKSDYYNKILVSKILGKCVVMFVKEYFKIRPEGFRAEDVFVCESRYSAKTKSFKKI
KLWTMPLSAVKFVPRHTPLPVVRVASVFANSDKIENKESIEPMNEETKGDENNSIIDKDR
EDVPVEISNGEPGCQYYEQLHYNDLWLKIGDCVFIKSHGLVQPRVGRIEKMWVRGGAAYF
FGPIFIHPEETEHEPTKMFYKKEVFLSNVEETCTMTCVIGKCSVLSFKDYLSCRPTEVNE
NEVYICESRYNETDKQMKRFKGLKRFSLSAKVLDDEVYYFRKPIVPHKEPSPLLDKKIQE
LEMKFAEFEEPDEEHEEGVDEEAETAEQPSVPQLQTPVPNEMEIAPYTPPQSTPKSIKGT
KQKEGKRKTNPSGYILFSSEMRAVIKAKHPDFSFGELSRLVGTEWRNLEAVKKAEYEERA
AKQAEQQERERAAQQQQCASPRAGTPVGAIMGVVPPPTPMGILHQQMTPVTGMIGGYPQG
MPPLQGPIDGMASLGSMQSLHPGVPPPPHLPPGVQPLGVIGQSVTTMVGGSPTVTTTGAP
YGQQGQQAPPPYPTQVAAQQAIQQQPSTPMFVAPPPKTQRLLHSEAYLRYIEGLRADSNT
VSKWDQSLSARRQDVHLTKEQESRLPSHWLKSKGAHTTMVDALWRLRDIMLRDTLNIRHA
YSLE
NT seq 5055 nt   +upstreamnt  +downstreamnt
atgagaactttttcgttgatattaccagttccaatgggttcaaaaagaaaaagagcaact
tctccttcaagtagcattagtggtggagactgtgatgatggccatcatgtttctggaagc
aatgcaggatcaagcagaaaaagaaggaaagttgccaatgtcccaactgtagatccaatt
gctgtttgccatgaactttacaataccattagagattacaaggatgatcatggaagactt
ctatgtgagctcttcatcagagcaccaaagcgaaggaaccaaccggattattacgaagtg
gtctctcaccctatcgatcttttgaagatacagcaaaaattaaagatggaggaatatgat
gacgttgatcagttaacttctgattttcagcttatggttaataatgcaaaagcttactat
aaggaagattcggctgagtgcaaagcagcaagtaaattgtgggatttgtatacaagaacc
agaaatgaatttgttcaaagaggagattatgaacaagaagatgaagaggatgattatgat
ggccacgatcatcctggcacagctggtgatgaggatggtgcagcacattataataatcta
aaggaacagctggaaaatctgtttgaagctgtagccacctatgctgatccatcaggtcat
cttgtcagtgagctgtttcaaaagttgccatccagagtgcaatatccagactactatgaa
attattaaggagccagtagacttgaagactgttgcacagaggattcagaatggtgcttac
aagaatgttaatgtgatggctagagatattgaacttttagtaagaaatgctaaaacctac
aatgagccagggtcaccaatcttcaaggatgcaaataccattaagaaagtatttaatcag
aagagagcagaacttgagcacaacttggagcctaccaaatccagtcttcgaatcaggaac
cgaaggtcagcacaaggagatcgtttgtcggcaattacaatggctttgcaatatggatct
gagagtgaggaggaggcgggtttaggtgcggtcactcatttcgaagatggtgactctgac
ggagaaagcattggttcatctgtcgatgtaactagtccaatttatcagttgttcgaagca
gttaggaatcatcggaacagtcagggacaacttctggctcagcctttctttcgtctgcct
tccaagaaagattaccctgattattatcaacaaatcaaacatcccatgtcactacaaata
ataagacaaaaattgaagaacaatgaatttgaaaaccttgaccaactggaggctgacatg
aaactaatgtttgaaaatgccaagcactataatattcctaattctgcaatcttcaaacgt
gtgttgaagctgcagcaagtcatgcaggccaagaggaaggagctcgcaagaagagagtac
acagaggatggtgacagtatggtatcttctgtaacatctgatacaggcagtggcaagaga
aaagggtttttaaattccagcaataagaagctagaaaggattggaaaaaaaactgagact
catttaaagcacagactgaaagtactatacaatacaattatcgagtcacgtgacctaaca
acaggacgaagatattgtgagctgtttttgattagaccgtcaaaaaaggattatccagat
tattataaagtcatcctggagcctattgacctgaagatattggaacataacatacgtaat
gaaaaatatacaagcgatgaagcatttatagatgatttgaagttaatgtttcgaaatgca
agacactataatgaagagggttcacaggtatacaatgatgctaatatactggagaaaatt
ctaaaagataaaataaaagaattgggtcccttacctgatgatgacaccgcttcacctaaa
ctgaaactaagcaggaagagtggtatttcgcccaaaaaatccaaatacttgactcctctg
cagcaaaagctaaatgagttatacgaagcagtaaaaaattacacagatgtcagaggccga
agactgagtgccatctttctcagactacctactcgatcggaactcccagattactattta
acaattaaaaaaccaattgacatggagaaagtgaagagtcacatgatgtctaataagtac
caggacgtcgactcctttgttgatgaatttgtgttgatgtttaacaacgcttgcacttac
aacgaaccagaatctcttatttataaagatgcactagtccttcacaaagtccttctggaa
accaaaagggatttggatggagaagatgatgcacacattcccaatgtaaagttactcata
caggagttgatacacaacctatttgtctctgtccttagccaccaggatgatgaagggaga
tgttatagtgactctttagcagagattccagcgactgatccaagcacccctaacaagcca
cctttgacttttgaaattattcgaaaaaatattgaaactaatcgatatagaagacttgat
gttttccaggagcacatgtttgaagtgttggaaagagcaaggcggttaaacagaactgat
tcagaaatctatgaagatgcagtggagctgcagcattttttcattaagatacgtgatgaa
ctgtgcaaaaatggagagattctgctttcaccagctctcagcttcactctgaaacatttg
cagcatgatttggaaaaagaaaagaaggagaagctgccaaaagaaatagaggaagataag
cagaagagagaggaggaaaagaaagaattatcagaatctgaaaaaaacatgagtgatgat
cactcaggaagccatggaacatatggattccagcgtacatatagccaggattgtagcttt
aaagacaacatgtaccacgtgggagattatgtttatgttgaaccagctgaaccaaacctg
ctgcctcacattgtctgcattgagagactctgggaagacgacactggtgagaaatggctg
tatggctgctggttttatcggccaaatgaaaccttccacttggctacacgaaaatttctt
gaaaaagaagttttcaaaagtgattactataacaagattctggtcagcaaaattctaggc
aaatgtgtagtgatgtttgtaaaggaatacttcaaaattcggcctgaaggtttccgagct
gaagatgtatttgtctgtgaatctcgatattcagcaaagaccaaatctttcaaaaaaatt
aaattgtggactatgcccctgagtgcagtgaaatttgttccacgacacacaccattacca
gtagttcgcgtcgcttccgttttcgctaattcagacaaaatagaaaacaaagaatctatc
gaacctatgaatgaagaaaccaaaggtgacgagaataacagcatcattgataaggatcga
gaagatgtaccagtggaaatttcaaatggagaaccaggctgccagtattatgaacagctg
cattataatgatttgtggctcaagattggagattgtgttttcataaaatctcatggttta
gtccaaccacgtgtgggcaggattgagaagatgtgggtacggggtggtgctgcatatttc
ttcggccccatattcattcatcctgaggagacggagcatgagcctaccaaaatgttttac
aagaaggaagtgtttcttagcaatgtggaagaaacttgcaccatgacctgtgtgattggc
aagtgcagtgtattgtcatttaaagactacctctcttgtcgaccaacggaagtgaatgaa
aatgaagtatacatttgtgaaagtcgttacaacgaaactgacaaacaaatgaaaagattt
aaaggtctcaagcgattttccttatctgctaaagtactggatgatgaagtgtactatttc
aggaaacctattgttccccacaaggaaccatctcctcttttagataagaaaatacaggag
ctagagatgaaatttgcagaatttgaggaacctgatgaagagcacgaagaaggcgttgat
gaagaagctgaaactgctgaacagccatctgtgcctcagttacaaactcctgttcccaat
gaaatggaaatagctccttatacacctccacagtcaaccccaaaatccattaagggcact
aaacagaaggagggaaagaggaagactaacccaagtggttacatcttgtttagcagtgaa
atgagagctgttatcaaagccaagcatccggacttctcttttggagagctgagtaggctt
gtgggtacggaatggagaaaccttgaggctgtcaaaaaagcagagtatgaagagcgggca
gcaaagcaggctgagcagcaggagagagagcgtgcagctcagcagcagcagtgtgcctcc
ccacgggctggtacacctgtaggtgccatcatgggggtagtaccacctcctacaccaatg
ggaattctccatcagcagatgacccctgtcacaggcatgataggtggctacccacaaggc
atgcctccattacaaggccctattgatggcatggccagcttgggcagcatgcagtcactt
caccctggggtgcctccaccaccccaccttcccccaggcgttcaaccgctgggtgttata
ggtcaaagtgtgaccaccatggtgggaggctctccaactgtgaccacaacaggggcacct
tatggtcaacagggtcagcaggctccgcctccatatcctacacaagtggcagcacaacaa
gctatccagcagcagccatcgacgccgatgtttgtggctcctccaccaaagactcagcga
ttactacactctgaagcttacctgcgatacattgaggggctccgtgctgactctaacact
gtcagcaagtgggaccaatcactgtcggcaagaaggcaagatgtccaccttacaaaagaa
caagagagcagattgccttctcactggttaaagagtaaaggtgctcacacaaccatggtt
gatgcactgtggcgtttacgtgacatcatgctgcgagatactctaaacattcggcatgcg
tacagtctggaataa

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