Leucoraja erinaceus (little skate): 129705000
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Entry
129705000 CDS
T09122
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129705000 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
leri04131
]
129705000 (vps35)
Membrane trafficking [BR:
leri04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
129705000 (vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
129705000
NCBI-ProteinID:
XP_055504348
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Position
17:complement(2457161..2500313)
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AA seq
796 aa
AA seq
DB search
MPTTQQSPQDEQEKLLDEAVQTVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYIK
SFSQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEETEEVVTGDINDSM
DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ
IVLTGILEQVVNCRDGLAQEYLMECIIQVFPDEFHLQTLNPFLRSCAELHQSVNVKNIII
ALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
CYPERVDYVDKVLETTVDIFNKLNLEHIATSSAVSKELTRLLKIPIDTYNNILTVLKLKH
FHPLFEYFDYESRKNMSCYILSNALEYNTEINGQEQVDAILNLVSTLIQDQPDQPAEDPD
PEDFGEEQSLVGRFIHLLQSEDPDQQYLILNSARKHFGAGGNQRIRYTLPPLVFAAYQLA
FCYKENSKVDEKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGDIGFENHE
TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
LKKPDQCRAVSICAHLFWSGRNTDKNGDEIHDGKRVMECLKKALKIANQCMDPSLQVQLF
TEILNRYIYFYEKENEAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR
RESPEADGPIYEGLVL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcctacgactcagcagtctcctcaggatgagcaggaaaagttgcttgatgaagctgtt
cagactgttaaggtccagtctttccaaatgaaacgatgcttggacaagaataagttgatg
gatgcattaaaacatgcttcaaatatgctcggtgaactgcgaacctccatgttgtcacca
aagagttattatgaactctacatggcaatttcagatgaattgcattatttggaagtttac
ctgactgatgaatttgccaaagggaggaaggtggctgacctatatgaactagttcagtac
gctggcaatattattccaaggctctacttgctcatcactgttggagttgtctacatcaag
tcattttcgcagtccagaaaggatattcttaaggatctggtagaaatgtgccgtggcgta
cagcatccattacgagggctcttcttaaggaactacttgcttcagtgtaccagaaatatt
ttgcctgatgaaggggaagagacagaagaagttgtaactggagacatcaatgattctatg
gactttgtgctactgaactttgcagaaatgaacaaactctgggtgcgaatgcagcaccag
ggtcatagcagggaccgcgaaaaacgtgaacgagaacgtcaggaactaagaatccttgtc
ggtacaaatctagtccgacttagtcagctggaaggcgttaatgtggagcggtacaaacag
attgtgttgactggaatattagaacaagttgtaaactgcagggatggtttggctcaggag
tatctaatggaatgtattattcaggtgtttcctgatgagtttcacctgcagacgctgaac
ccattccttcgttcttgtgctgagctccaccaaagtgttaatgttaaaaacattatcatt
gcattaattgacaggttggctttgtttgcgcatcgtgaagatggtcccgggattcctgct
gacataaagttgtttgacatattttctcaacaagtcgccacagtaatccagtcaaggcag
gatatgccatccgaggatgtggtgtctttacaagtgtctcttatcaacttggccatgaag
tgttatccagaacgggtggactatgttgataaggttcttgaaaccactgtggatattttc
aacaaacttaatcttgaacatattgccacgagcagtgcagtttcgaaagagttaacacgg
cttctgaagattcccattgacacctacaataatatacttactgtcctgaagttgaaacac
ttccatcctttgttcgaatactttgactatgaatcacgcaaaaatatgagttgttacata
ctgagcaatgctcttgagtacaacacagaaataaatggtcaggaacaggtggatgcaata
ctgaacctggtatcaacactgattcaagatcagcctgatcagccggcagaagatcctgac
ccagaggattttggtgaagaacaaagtcttgttggtagattcattcacttacttcaatct
gaggatcctgaccagcaatatcttattttaaacagtgccagaaaacactttggtgctggt
ggaaatcaacgcatacgttatactttaccaccattagtttttgctgcctaccaactagca
ttctgctataaagagaattcaaaagtggatgaaaagtgggaaaagaagtgccagaagata
ttttcatttgcccaccagaccatcagtgcgctgatcaaagcggagcttgcagagttacct
ctgcgcctgttcctgcagggggcgcttgcagcgggcgacattggatttgagaaccatgaa
actgtggcgtatgagttcatgtcacaggcattctcattgtatgaagatgaaatcagtgat
tccaaggcccagctggcagcaatcacattgataattggaacgtttgagcggatgaagtgt
tttagtgaagagaaccatgagcctctgaggacgcagtgtgcattggctgcctcaaagctg
cttaaaaagcccgatcagtgtcgtgccgtcagcatctgcgcgcacctattctggtctgga
cggaacacggataagaatggtgacgagatccatgatggcaagcgagtgatggaatgcctg
aagaaggctttgaagattgcaaatcagtgcatggatccatcattacaagttcagctgttc
actgaaatccttaatcgatatatatatttttatgagaaagaaaatgaggcggtgacaatt
caagtcttaaatcagcttattcaaaaaataagggaagatcttccaaacttggaatccagt
gaagaaactgaacaaattaacaaacactttcacaatacactggagcacctgcgcctgcga
agggaatcgcctgaggccgacggaccaatttatgaaggtctcgtgttgtaa
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